Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 131409627 | . | G | A | CCDS4150.1:NM_000758.3:c.111caG>caA_NP_000749.2:p.37Q>Q | Homo sapiens colony stimulating factor 2 (CSF2), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5d71 | 1 | P04141 | 100.0 | 1e-105 |
X-RAY |
2015-10-14 | GLN | A:37 | A:20 | 69.0 | 0.383 | H | -68.1 | -42.3 | 21.0 | 0.117 | 0.266 |
C:None:0.267 |
HOH |
3.083 |
O |
O |
|
5d72 | 1 | P04141 | 100.0 | 2e-103 |
X-RAY |
2015-10-14 | GLN | A:37 | A:20 | 107.0 | 0.594 | H | -62.4 | -37.6 | 22.0 | 0.122 | 0.472 |
D:None:0.472 |
HOH |
5.375 |
NE2 |
O |
|
GLN | B:37 | B:20 | 112.0 | 0.622 | H | -62.3 | -41.9 | NA | NA | NA | |||||||||||||
1csg | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
1993-10-31 | GLN | A:20 | A:20 | 132.0 | 0.733 | H | -64.9 | -36.7 | 85.0 | 0.472 | 0.261 |
B:P04141:0.261 |
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GLN | B:20 | B:20 | 127.0 | 0.706 | H | -67.6 | -34.1 | 78.0 | 0.433 | 0.273 |
A:P04141:0.272 |
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2gmf | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
1996-11-08 | GLN | A:20 | A:20 | 127.0 | 0.706 | H | -65.8 | -44.2 | 127.0 | 0.706 | 0.0 |
HOH |
3.650 |
CB |
O |
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GLN | B:20 | B:20 | 125.0 | 0.694 | H | -60.7 | -44.7 | NA | NA | NA | |||||||||||||
4nkq | 2 | P04141 | 100.0 | 6e-93 |
X-RAY |
2015-09-23 | GLN | B:20 | C:20 | 97.0 | 0.539 | H | -59.8 | -43.7 | 14.0 | 0.078 | 0.461 |
A:P32927:0.211 C:P15509:0.256 |
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5c7x | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
2015-10-14 | GLN | A:20 | A:20 | 115.0 | 0.639 | H | -65.9 | -37.4 | 32.0 | 0.178 | 0.461 |
D:None:0.461 |
HOH |
5.256 |
NE2 |
O |
|
GLN | B:20 | B:20 | 109.0 | 0.606 | H | -71.2 | -40.7 | NA | NA | NA | |||||||||||||
5d70 | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
2015-10-14 | GLN | A:20 | A:20 | 68.0 | 0.378 | H | -66.8 | -42.6 | 21.0 | 0.117 | 0.261 |
C:None:0.261 |
HOH |
2.885 |
O |
O |
|
6bfq | 3 | P04141 | 100.0 | 6e-93 |
X-RAY |
2018-09-12 | GLN | I:20 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLN | J:20 | J:20 | 124.0 | 0.689 | H | -70.9 | -49.7 | NA | NA | NA | |||||||||||||
GLN | K:20 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
GLN | L:20 | K:20 | 127.0 | 0.706 | H | -73.5 | -50.3 | 127.0 | 0.706 | 0.0 |
HOH |
8.334 |
C |
O |
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6bfs | 3 | P04141 | 100.0 | 6e-93 |
X-RAY |
2018-09-12 | GLN | C:20 | C:20 | 71.0 | 0.394 | H | -66.3 | -41.1 | 55.0 | 0.306 | 0.088 |
B:None:0.089 |
HOH |
4.726 |
NE2 |
O |
|
4rs1 | 2 | P04141 | 100.0 | 3e-81 |
X-RAY |
2015-11-11 | GLN | B:7 | A:20 | 65.0 | 0.361 | H | -64.0 | -52.4 | 29.0 | 0.161 | 0.2 |
A:P15509:0.2 |
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5d22 | 1 | P28773 | 80.31 | 6e-74 |
X-RAY |
2016-11-16 | LYS | A:20 | A:20 | 124.0 | 0.62 | H | -58.5 | -51.6 | 124.0 | 0.62 | 0.0 |
EDO HOH |
2.895 3.698 |
NZ O |
O2 O |
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LYS | B:20 | B:20 | 130.0 | 0.65 | H | -57.5 | -51.1 | NA | NA | NA | |||||||||||||
5d28 | 2 | P28773 | 80.31 | 6e-74 |
X-RAY |
2016-11-16 | LYS | B:20 | B:20 | 131.0 | 0.655 | H | -64.2 | -39.1 | 24.0 | 0.12 | 0.535 |
A:Q9J5U5:0.535 |
HOH |
8.055 |
CD |
O |
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LYS | C:20 | C:20 | 119.0 | 0.595 | H | -64.7 | -39.2 | 21.0 | 0.105 | 0.49 |
D:Q9J5U5:0.49 |
HOH |
9.851 |
C |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04141-f1 | 1 | P04141 | 100.0 | 5e-106 | GLN | A:37 | A:37 | 100.0 | 0.556 | H | -62.4 | -44.1 |