Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131409634 . C A CCDS4150.1:NM_000758.3:c.118Cgg>Agg_NP_000749.2:p.40R>R Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 ARG A:40 A:23 60.0 0.267 H -65.2 -39.0 59.0 0.262 0.005 C:None:0.004
 HOH
 3.069
 CD
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 ARG A:40 A:23 85.0 0.378 H -71.2 -38.6 64.0 0.284 0.094 D:None:0.093
 HOH
 6.910
 NH2
 O
ARG B:40 B:23 94.0 0.418 H -65.4 -38.8 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 ARG A:23 A:23 108.0 0.48 H -62.4 -37.6 65.0 0.289 0.191 B:P04141:0.191
ARG B:23 B:23 121.0 0.538 H -61.7 -48.2 85.0 0.378 0.16 A:P04141:0.16
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 ARG A:23 A:23 88.0 0.391 H -62.5 -40.9 88.0 0.391 0.0 HOH
 6.590
 O
 O
ARG B:23 B:23 94.0 0.418 H -64.3 -39.2 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 ARG B:23 C:23 81.0 0.36 H -56.3 -54.5 36.0 0.16 0.2 C:P15509:0.2
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ARG A:23 A:23 81.0 0.36 H -67.7 -39.8 63.0 0.28 0.08 D:None:0.08
 HOH
 5.484
 NH1
 O
ARG B:23 B:23 89.0 0.396 H -54.5 -42.0 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ARG A:23 A:23 61.0 0.271 H -66.0 -35.6 60.0 0.267 0.004 C:None:0.004
 HOH
 3.594
 NH1
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ARG I:23 G:23 173.0 0.769 360.0 -135.6 NA NA NA
ARG J:23 J:23 66.0 0.293 H -54.4 -43.7 NA NA NA
ARG K:23 I:23 144.0 0.64 360.0 -78.1 NA NA NA
ARG L:23 K:23 71.0 0.316 H -53.8 -43.9 71.0 0.316 0.0 HOH
 9.362
 N
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ARG C:23 C:23 61.0 0.271 H -55.8 -44.7 39.0 0.173 0.098 B:None:0.098
 HOH
 7.637
 NH1
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 ARG B:10 A:23 50.0 0.222 H -68.4 -25.4 25.0 0.111 0.111 A:P15509:0.111
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 LEU A:23 A:23 45.0 0.265 H -61.5 -41.4 45.0 0.265 0.0 HOH
 4.057
 CB
 O
LEU B:23 B:23 42.0 0.247 H -62.6 -41.6 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 LEU B:23 B:23 47.0 0.276 H -64.7 -35.7 0.0 0.0 0.276 A:Q9J5U5:0.276
LEU C:23 C:23 49.0 0.288 H -64.1 -35.8 2.0 0.012 0.276 D:Q9J5U5:0.276

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 ARG A:40 A:40 101.0 0.449 H -59.9 -42.7