Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131409638 . G A CCDS4150.1:NM_000758.3:c.122cGt>cAt_NP_000749.2:p.41R>H Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 ARG A:41 A:24 125.0 0.556 H -59.8 -55.8 81.0 0.36 0.196 C:None:0.196
 HOH
 3.663
 CD
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 ARG A:41 A:24 120.0 0.533 H -63.5 -47.4 83.0 0.369 0.164 D:None:0.164
 HOH
 7.484
 CG
 O
ARG B:41 B:24 150.0 0.667 H -60.6 -54.9 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 ARG A:24 A:24 121.0 0.538 H -62.7 -60.4 121.0 0.538 0.0
ARG B:24 B:24 139.0 0.618 H -63.2 -41.5 139.0 0.618 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 ARG A:24 A:24 126.0 0.56 H -64.8 -51.5 126.0 0.56 0.0 HOH
 5.816
 O
 O
ARG B:24 B:24 118.0 0.524 H -60.8 -53.5 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 ARG B:24 C:24 162.0 0.72 H -59.0 -36.6 74.0 0.329 0.391 A:P32927:0.391
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ARG A:24 A:24 123.0 0.547 H -67.4 -46.3 83.0 0.369 0.178 D:None:0.178
ARG B:24 B:24 138.0 0.613 H -63.0 -57.7 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ARG A:24 A:24 125.0 0.556 H -64.3 -48.9 80.0 0.356 0.2 C:None:0.2
 HOH
 3.034
 O
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ARG I:24 G:24 172.0 0.764 T -88.6 12.3 NA NA NA
ARG J:24 J:24 142.0 0.631 H -75.1 -36.7 NA NA NA
ARG K:24 I:24 143.0 0.636 H -72.8 -38.6 NA NA NA
ARG L:24 K:24 138.0 0.613 H -74.7 -36.8 138.0 0.613 0.0 HOH
 4.848
 NH2
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ARG C:24 C:24 148.0 0.658 H -61.3 -46.1 148.0 0.658 0.0 HOH
 7.918
 NH2
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 ARG B:11 A:24 131.0 0.582 H -76.6 -40.8 130.0 0.578 0.004 A:P15509:0.004
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 SER A:24 A:24 57.0 0.496 H -65.0 -45.1 57.0 0.496 0.0 HOH
 3.700
 CA
 O
SER B:24 B:24 67.0 0.583 H -60.5 -46.5 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 SER B:24 B:24 46.0 0.4 H -66.0 -41.8 23.0 0.2 0.2 A:Q9J5U5:0.2
 HOH
 7.796
 OG
 O
SER C:24 C:24 55.0 0.478 H -66.2 -40.2 33.0 0.287 0.191 D:Q9J5U5:0.191

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 ARG A:41 A:41 117.0 0.52 H -63.2 -49.9