Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131410585 . C A CCDS4150.1:NM_000758.3:c.284aCc>aAc_NP_000749.2:p.95T>N Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 THR A:95 A:78 62.0 0.443 H -69.2 -41.4 62.0 0.443 0.0 HOH
 3.664
 CB
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 THR A:95 A:78 51.0 0.364 H -64.2 -44.5 51.0 0.364 0.0
THR B:95 B:78 57.0 0.407 H -59.3 -48.1 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 THR A:78 A:78 50.0 0.357 H -70.6 -44.2 50.0 0.357 0.0
THR B:78 B:78 47.0 0.336 H -75.0 -40.8 47.0 0.336 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 THR A:78 A:78 52.0 0.371 H -69.4 -38.1 52.0 0.371 0.0 HOH
 4.158
 CB
 O
THR B:78 B:78 54.0 0.386 H -72.3 -43.4 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 THR B:78 C:78 62.0 0.443 H -59.9 -25.0 62.0 0.443 0.0
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 THR A:78 A:78 49.0 0.35 H -70.2 -40.1 49.0 0.35 0.0 HOH
 7.330
 O
 O
THR B:78 B:78 52.0 0.371 H -65.6 -42.0 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 THR A:78 A:78 63.0 0.45 H -64.3 -41.0 63.0 0.45 0.0 HOH
 3.274
 O
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 THR I:78 G:78 66.0 0.471 H -64.6 -42.1 NA NA NA
THR J:78 J:78 66.0 0.471 H -64.7 -42.2 NA NA NA
THR K:78 I:78 67.0 0.479 H -64.2 -42.1 NA NA NA
THR L:78 K:78 66.0 0.471 H -64.3 -42.1 66.0 0.471 0.0
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 THR C:78 C:78 62.0 0.443 H -65.7 -42.8 62.0 0.443 0.0 HOH
 6.634
 CA
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 THR B:65 A:78 64.0 0.457 H -42.5 -41.6 64.0 0.457 0.0
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 THR A:78 A:78 50.0 0.357 H -64.0 -44.2 50.0 0.357 0.0 HOH
 3.555
 CG2
 O
THR B:78 B:78 65.0 0.464 H -64.3 -41.5 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 THR B:78 B:78 51.0 0.364 H -65.2 -35.4 51.0 0.364 0.0
THR C:78 C:78 53.0 0.379 H -64.4 -34.4 53.0 0.379 0.0 HOH
 6.800
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 THR A:95 A:95 55.0 0.393 H -68.2 -38.2