Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131410613 . C A CCDS4150.1:NM_000758.3:c.312caC>caA_NP_000749.2:p.104H>Q Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 HIS A:104 A:87 88.0 0.451 H -112.5 -17.3 13.0 0.067 0.384 B:None:0.385
 HOH
 2.745
 O
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 HIS A:104 A:87 92.0 0.472 H -109.2 -6.7 14.0 0.072 0.4 C:None:0.4
 HOH
 3.023
 ND1
 O
HIS B:104 B:87 94.0 0.482 H -100.8 -17.8 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 HIS A:87 A:87 38.0 0.195 T -103.8 28.7 38.0 0.195 0.0
HIS B:87 B:87 54.0 0.277 T -142.8 -30.5 54.0 0.277 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 HIS A:87 A:87 57.0 0.292 H -102.4 -13.8 57.0 0.292 0.0 HOH
 3.323
 CE1
 O
HIS B:87 B:87 54.0 0.277 H -118.6 11.4 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 HIS B:87 C:87 140.0 0.718 S -138.8 77.8 140.0 0.718 0.0
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 HIS A:87 A:87 92.0 0.472 H -96.7 -5.8 19.0 0.097 0.375 C:None:0.374
 PGE
HOH
 9.246
4.100
 NE2
CD2
 O4
O
HIS B:87 B:87 98.0 0.503 H -98.1 -34.9 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 HIS A:87 A:87 90.0 0.462 H -117.3 -11.2 13.0 0.067 0.395 B:None:0.395
 HOH
 2.630
 O
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 HIS I:87 G:87 109.0 0.559 H -102.9 2.8 NA NA NA
HIS J:87 J:87 131.0 0.672 H -106.2 7.1 NA NA NA
HIS K:87 I:87 108.0 0.554 H -103.7 3.9 NA NA NA
HIS L:87 K:87 129.0 0.662 H -103.3 3.2 129.0 0.662 0.0
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 HIS C:87 C:87 127.0 0.651 H -117.3 -19.6 56.0 0.287 0.364 B:None:0.169
A:None:0.262
 HOH
 2.724
 O
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 HIS B:74 A:87 119.0 0.61 H -101.2 -33.0 119.0 0.61 0.0 HOH
 6.207
 C
 O
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 HIS A:87 A:87 87.0 0.446 H -104.7 -29.9 87.0 0.446 0.0 HOH
 5.018
 N
 O
HIS B:87 B:87 83.0 0.426 H -104.7 -29.1 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 HIS B:87 B:87 134.0 0.687 H -108.6 -9.9 134.0 0.687 0.0
HIS C:87 C:87 110.0 0.564 H -115.0 -12.5 110.0 0.564 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 HIS A:104 A:104 112.0 0.574 H -117.8 -16.9