Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131411454 . C A CCDS4150.1:NM_000758.3:c.344aCc>aAc_NP_000749.2:p.115T>N Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 THR A:115 A:98 67.0 0.479 E -116.5 148.6 67.0 0.479 0.0 HOH
 5.072
 O
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 THR A:115 A:98 69.0 0.493 E -126.5 171.5 69.0 0.493 0.0
THR B:115 B:98 73.0 0.521 E -104.0 170.3 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 THR A:98 A:98 62.0 0.443 E -83.5 171.1 62.0 0.443 0.0
THR B:98 B:98 62.0 0.443 E -120.2 -178.4 62.0 0.443 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 THR A:98 A:98 59.0 0.421 E -127.3 176.3 59.0 0.421 0.0 HOH
 4.593
 CG2
 O
THR B:98 B:98 61.0 0.436 E -98.8 171.8 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 THR B:98 C:98 84.0 0.6 -86.3 108.6 84.0 0.6 0.0
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 THR A:98 A:98 63.0 0.45 E -120.0 166.9 63.0 0.45 0.0
THR B:98 B:98 72.0 0.514 -129.2 85.7 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 THR A:98 A:98 55.0 0.393 E -111.6 169.7 55.0 0.393 0.0 HOH
 4.990
 O
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 THR I:98 G:98 51.0 0.364 E -119.8 159.8 NA NA NA
THR J:98 J:98 52.0 0.371 E -119.5 159.5 NA NA NA
THR K:98 I:98 50.0 0.357 E -120.2 158.8 NA NA NA
THR L:98 K:98 49.0 0.35 E -119.9 159.1 8.0 0.057 0.293 A:None:0.293
 HOH
 4.954
 N
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 THR C:98 C:98 53.0 0.379 E -116.4 162.9 53.0 0.379 0.0 HOH
 3.027
 OG1
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 THR B:85 A:98 56.0 0.4 E -130.4 155.9 22.0 0.157 0.243 A:P15509:0.243
 HOH
 8.216
 O
 O
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 THR A:98 A:98 47.0 0.336 E -119.1 162.7 47.0 0.336 0.0 ACT
HOH
 3.416
2.830
 N
O
 O
O
THR B:98 B:98 46.0 0.329 E -121.5 161.6 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 THR B:98 B:98 72.0 0.514 E -82.3 -180.0 72.0 0.514 0.0
THR C:98 C:98 81.0 0.579 E -84.3 -178.8 81.0 0.579 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 THR A:115 A:115 61.0 0.436 E -112.7 161.0