Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131411460 . T A CCDS4150.1:NM_000758.3:c.350aTt>aAt_NP_000749.2:p.117I>N Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 ILE A:117 A:100 103.0 0.589 E -86.8 116.6 103.0 0.589 0.0 HOH
 3.063
 N
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 ILE A:117 A:100 114.0 0.651 E -91.3 120.8 114.0 0.651 0.0
ILE B:117 B:100 115.0 0.657 E -88.6 112.0 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 ILE A:100 A:100 109.0 0.623 E -103.3 113.1 109.0 0.623 0.0
ILE B:100 B:100 103.0 0.589 E -94.2 126.4 103.0 0.589 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 ILE A:100 A:100 105.0 0.6 E -112.0 120.8 105.0 0.6 0.0 HOH
 3.176
 O
 O
ILE B:100 B:100 103.0 0.589 E -113.5 120.4 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 ILE B:100 C:100 111.0 0.634 E -132.3 116.3 95.0 0.543 0.091 C:P15509:0.091
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ILE A:100 A:100 111.0 0.634 E -83.3 131.6 111.0 0.634 0.0
ILE B:100 B:100 110.0 0.629 E -118.5 108.5 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ILE A:100 A:100 96.0 0.549 E -90.9 118.5 96.0 0.549 0.0 HOH
 2.969
 N
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ILE I:100 G:100 96.0 0.549 E -106.9 127.5 NA NA NA
ILE J:100 J:100 98.0 0.56 E -106.7 128.3 NA NA NA
ILE K:100 I:100 94.0 0.537 E -106.5 128.1 NA NA NA
ILE L:100 K:100 92.0 0.526 E -106.2 127.7 3.0 0.017 0.509 B:None:0.383
A:None:0.24
 HOH
 3.490
 CG1
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ILE C:100 C:100 90.0 0.514 E -96.2 128.9 90.0 0.514 0.0 HOH
 3.035
 CD1
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 ILE B:87 A:100 111.0 0.634 E -92.2 122.3 28.0 0.16 0.474 A:P15509:0.474
 HOH
 7.951
 CD1
 O
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 ILE A:100 A:100 100.0 0.571 E -96.3 126.7 100.0 0.571 0.0 ACT
HOH
 8.730
2.561
 N
O
 O
O
ILE B:100 B:100 105.0 0.6 E -93.4 127.8 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 ILE B:100 B:100 115.0 0.657 E -80.8 117.4 115.0 0.657 0.0
ILE C:100 C:100 136.0 0.777 E -79.2 117.8 136.0 0.777 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 ILE A:117 A:117 110.0 0.629 E -95.5 122.5