Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131411463 . T A CCDS4150.1:NM_000758.3:c.353aTc>aAc_NP_000749.2:p.118I>N Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 ILE A:118 A:101 28.0 0.16 E -124.9 169.4 28.0 0.16 0.0 HOH
 5.598
 N
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 ILE A:118 A:101 36.0 0.206 E -130.6 163.1 36.0 0.206 0.0
ILE B:118 B:101 34.0 0.194 E -123.7 165.2 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 ILE A:101 A:101 28.0 0.16 E -114.4 166.3 28.0 0.16 0.0
ILE B:101 B:101 28.0 0.16 E -135.5 161.7 28.0 0.16 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 ILE A:101 A:101 27.0 0.154 E -130.7 168.5 27.0 0.154 0.0 HOH
 3.494
 CG2
 O
ILE B:101 B:101 24.0 0.137 E -129.3 163.4 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 ILE B:101 C:101 41.0 0.234 E -130.6 173.8 22.0 0.126 0.108 C:P15509:0.109
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ILE A:101 A:101 39.0 0.223 E -139.8 163.3 39.0 0.223 0.0 HOH
 9.263
 CD1
 O
ILE B:101 B:101 30.0 0.171 E -123.1 175.8 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 ILE A:101 A:101 24.0 0.137 E -128.5 168.6 24.0 0.137 0.0 HOH
 5.701
 N
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ILE I:101 G:101 44.0 0.251 E -134.0 170.4 NA NA NA
ILE J:101 J:101 43.0 0.246 E -134.1 170.8 NA NA NA
ILE K:101 I:101 45.0 0.257 E -133.3 171.2 NA NA NA
ILE L:101 K:101 43.0 0.246 E -134.0 169.8 0.0 0.0 0.246 B:None:0.046
A:None:0.234
 HOH
 4.511
 O
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 ILE C:101 C:101 42.0 0.24 E -129.0 167.4 42.0 0.24 0.0 HOH
 3.394
 CB
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 ILE B:88 A:101 32.0 0.183 E -135.4 154.1 7.0 0.04 0.143 A:P15509:0.143
 HOH
 6.797
 CD1
 O
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 ILE A:101 A:101 27.0 0.154 E -133.2 162.9 27.0 0.154 0.0 HOH
 3.430
 CA
 O
ILE B:101 B:101 24.0 0.137 E -134.4 161.9 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 ILE B:101 B:101 23.0 0.131 E -129.3 158.3 23.0 0.131 0.0
ILE C:101 C:101 24.0 0.137 E -129.3 158.1 24.0 0.137 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 ILE A:118 A:118 26.0 0.149 E -126.6 164.0