Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 131411466 | . | C | A | CCDS4150.1:NM_000758.3:c.356aCc>aAc_NP_000749.2:p.119T>N | Homo sapiens colony stimulating factor 2 (CSF2), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5d71 | 1 | P04141 | 100.0 | 1e-105 |
X-RAY |
2015-10-14 | THR | A:119 | A:102 | 70.0 | 0.5 | E | -70.7 | 158.6 | 70.0 | 0.5 | 0.0 |
HOH |
3.707 |
CB |
O |
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5d72 | 1 | P04141 | 100.0 | 2e-103 |
X-RAY |
2015-10-14 | THR | A:119 | A:102 | 51.0 | 0.364 | E | -69.3 | 155.5 | 51.0 | 0.364 | 0.0 | ||||||
THR | B:119 | B:102 | 60.0 | 0.429 | E | -72.0 | 165.9 | NA | NA | NA | |||||||||||||
1csg | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
1993-10-31 | THR | A:102 | A:102 | 46.0 | 0.329 | E | -74.4 | 157.0 | 46.0 | 0.329 | 0.0 | ||||||
THR | B:102 | B:102 | 37.0 | 0.264 | E | -74.3 | 160.7 | 37.0 | 0.264 | 0.0 | |||||||||||||
2gmf | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
1996-11-08 | THR | A:102 | A:102 | 55.0 | 0.393 | E | -72.1 | 153.1 | 55.0 | 0.393 | 0.0 |
HOH |
6.183 |
N |
O |
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THR | B:102 | B:102 | 42.0 | 0.3 | E | -77.3 | 154.6 | NA | NA | NA | |||||||||||||
4nkq | 2 | P04141 | 100.0 | 6e-93 |
X-RAY |
2015-09-23 | THR | B:102 | C:102 | 47.0 | 0.336 | E | -79.3 | 158.1 | 38.0 | 0.271 | 0.065 |
C:P15509:0.064 |
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5c7x | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
2015-10-14 | THR | A:102 | A:102 | 65.0 | 0.464 | E | -65.8 | 151.6 | 65.0 | 0.464 | 0.0 |
HOH |
6.673 |
OG1 |
O |
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THR | B:102 | B:102 | 43.0 | 0.307 | E | -70.8 | 165.8 | NA | NA | NA | |||||||||||||
5d70 | 1 | P04141 | 100.0 | 6e-93 |
X-RAY |
2015-10-14 | THR | A:102 | A:102 | 61.0 | 0.436 | E | -73.9 | 155.1 | 61.0 | 0.436 | 0.0 |
HOH |
2.579 |
OG1 |
O |
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6bfq | 3 | P04141 | 100.0 | 6e-93 |
X-RAY |
2018-09-12 | THR | I:102 | G:102 | 75.0 | 0.536 | -65.8 | 161.6 | NA | NA | NA | |||||||
THR | J:102 | J:102 | 75.0 | 0.536 | -67.0 | 163.1 | NA | NA | NA | ||||||||||||||
THR | K:102 | I:102 | 74.0 | 0.529 | -65.2 | 161.9 | NA | NA | NA | ||||||||||||||
THR | L:102 | K:102 | 71.0 | 0.507 | -65.3 | 162.6 | 18.0 | 0.129 | 0.378 |
B:None:0.193 A:None:0.293 |
HOH |
3.276 |
CB |
O |
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6bfs | 3 | P04141 | 100.0 | 6e-93 |
X-RAY |
2018-09-12 | THR | C:102 | C:102 | 64.0 | 0.457 | E | -70.2 | 160.5 | 64.0 | 0.457 | 0.0 |
HOH |
2.956 |
N |
O |
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4rs1 | 2 | P04141 | 100.0 | 3e-81 |
X-RAY |
2015-11-11 | THR | B:89 | A:102 | 43.0 | 0.307 | -64.7 | 171.0 | 5.0 | 0.036 | 0.271 |
A:P15509:0.271 |
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5d22 | 1 | P28773 | 80.31 | 6e-74 |
X-RAY |
2016-11-16 | THR | A:102 | A:102 | 49.0 | 0.35 | E | -67.9 | 156.5 | 49.0 | 0.35 | 0.0 |
HOH |
2.824 |
N |
O |
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THR | B:102 | B:102 | 51.0 | 0.364 | E | -70.3 | 157.7 | NA | NA | NA | |||||||||||||
5d28 | 2 | P28773 | 80.31 | 6e-74 |
X-RAY |
2016-11-16 | THR | B:102 | B:102 | 49.0 | 0.35 | E | -67.9 | 157.2 | 49.0 | 0.35 | 0.0 | ||||||
THR | C:102 | C:102 | 65.0 | 0.464 | E | -69.3 | 152.3 | 65.0 | 0.464 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04141-f1 | 1 | P04141 | 100.0 | 5e-106 | THR | A:119 | A:119 | 53.0 | 0.379 | E | -68.7 | 156.7 |