Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 133509704 . T A CCDS4171.1:NM_170679.2:c.10Att>Ttt_NP_733779.1:p.4I>F Homo sapiens S-phase kinase associated protein 1 (SKP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 4 P63208 96.88 3e-100 X-RAY
 2019-06-26 ILE D:5 D:4 29.0 0.166 E -121.3 156.5 29.0 0.166 0.0
6bva 1 P63208 96.88 3e-100 X-RAY
 2018-07-18 ILE A:6 D:4 27.0 0.154 E -128.4 153.4 17.0 0.097 0.057 C:P0CG47:0.057
ILE E:6 C:4 24.0 0.137 E -134.4 156.5 NA NA NA
6byh 1 P63208 96.88 3e-100 X-RAY
 2018-07-18 ILE A:6 A:4 18.0 0.103 E -132.8 150.7 11.0 0.063 0.04 H:P0CG47:0.04
 HOH
 3.724
 CA
 O
ILE B:6 B:4 32.0 0.183 E -134.7 150.4 NA NA NA
ILE E:6 G:4 43.0 0.246 E -135.9 159.6 NA NA NA
6c16 1 P63208 96.88 3e-100 X-RAY
 2018-07-18 ILE A:6 A:4 36.0 0.206 E -125.2 151.7 36.0 0.206 0.0
ILE B:6 B:4 14.0 0.08 E -124.3 140.9 NA NA NA
4i6j 3 P63208 96.88 3e-100 X-RAY
 2013-03-13 ILE C:4 C:4 73.0 0.417 E -135.1 -146.0 73.0 0.417 0.0
5k35 2 P63208 96.88 3e-100 X-RAY
 2017-01-25 ILE B:4 B:4 17.0 0.097 E -142.0 170.3 17.0 0.097 0.0
5xyl 1 P63208 96.88 3e-100 NMR
 2018-07-11 ILE A:4 A:4 2.0 0.011 E -96.9 139.5 2.0 0.011 0.0
6ttu 2 P63208 96.88 3e-100 EM
 2020-02-12 ILE B:4 S:4 34.0 NA E -99.6 144.2 34.0 NA NA
6vcd 3 P63208 96.88 3e-100 EM
 2020-08-05 ILE C:4 C:4 2.0 0.011 E -109.7 145.0 2.0 0.011 0.0
6w66 1 P63208 96.88 3e-100 X-RAY
 2020-08-19 ILE A:4 A:4 13.0 0.074 E -136.4 135.6 13.0 0.074 0.0
6wcq 1 P63208 96.88 3e-100 EM
 2020-08-19 ILE A:4 A:4 12.0 0.069 E -135.2 133.4 10.0 0.057 0.012 D:Q13616:0.011
7b5l 5 P63208 96.88 3e-100 EM
 2021-02-10 ILE E:4 S:4 24.0 0.137 E -152.0 144.0 20.0 0.114 0.023 A:Q13616:0.023
7b5m 5 P63208 96.88 3e-100 EM
 2021-02-17 ILE E:4 S:4 22.0 0.126 E -161.8 138.7 20.0 0.114 0.012 A:Q13616:0.011
7b5r 4 P63208 96.88 3e-100 EM
 2021-02-10 ILE D:4 S:4 34.0 0.194 E -128.0 146.6 30.0 0.171 0.023 A:Q13616:0.023
2e31 2 P63208 96.88 1e-99 X-RAY
 2007-03-20 ILE B:7 B:4 71.0 0.406 E -147.0 140.1 71.0 0.406 0.0
2e32 2 P63208 96.88 1e-99 X-RAY
 2007-03-20 ILE B:7 B:4 37.0 0.211 E -107.5 137.1 37.0 0.211 0.0
ILE D:7 D:4 40.0 0.229 E -102.3 140.6 NA NA NA
3wso 2 P63208 96.88 1e-99 X-RAY
 2015-03-25 ILE B:7 B:4 26.0 0.149 E -111.8 153.3 26.0 0.149 0.0
5jh5 2 P63208 96.86 4e-99 X-RAY
 2016-09-14 ILE B:3 B:4 26.0 0.149 E -145.2 139.9 26.0 0.149 0.0
2ass 1 P63208 96.23 2e-98 X-RAY
 2005-10-18 ILE A:3 A:1004 25.0 0.143 E -137.4 159.9 25.0 0.143 0.0 HOH
 7.606
 CD1
 O
2ast 1 P63208 96.23 2e-98 X-RAY
 2005-10-18 ILE A:3 A:1004 6.0 0.034 E -147.4 151.2 6.0 0.034 0.0 HOH
 4.525
 CD1
 O
1p22 2 P63208 85.62 4e-90 X-RAY
 2003-07-08 ILE B:4 B:4 33.0 0.189 E -96.8 157.8 33.0 0.189 0.0
6wnx 2 P63208 85.62 4e-90 X-RAY
 2020-05-06 ILE B:4 B:4 25.0 0.143 E -147.5 145.9 25.0 0.143 0.0 HOH
 6.078
 CG2
 O
ILE E:4 E:4 58.0 0.331 360.0 139.7 NA NA NA
ILE H:4 H:4 28.0 0.16 E -150.4 147.6 NA NA NA
5ibk 1 P63208 85.62 9e-90 X-RAY
 2016-03-30 ILE A:6 A:4 16.0 0.091 E -121.6 174.9 16.0 0.091 0.0 HOH
 4.486
 CG2
 O
ILE E:6 D:4 18.0 0.103 E -120.9 176.4 NA NA NA
1fqv 2 P63208 85.62 1e-89 X-RAY
 2000-11-29 ILE B:4 B:4 35.0 0.2 E -147.9 142.6 35.0 0.2 0.0
ILE D:4 D:4 35.0 0.2 E -152.5 145.9 NA NA NA
ILE F:4 F:4 35.0 0.2 E -150.2 143.3 NA NA NA
ILE H:4 H:4 34.0 0.194 E -146.2 128.8 NA NA NA
ILE J:4 J:4 35.0 0.2 E -148.5 144.2 NA NA NA
ILE L:4 L:4 36.0 0.206 E -153.0 142.5 NA NA NA
ILE N:4 N:4 35.0 0.2 E -149.2 143.4 NA NA NA
ILE P:4 P:4 35.0 0.2 E -153.0 145.2 NA NA NA
2ovp 1 P63208 85.62 1e-89 X-RAY
 2007-04-24 ILE A:4 A:1004 32.0 0.183 E -131.5 157.7 32.0 0.183 0.0 HOH
 7.788
 N
 O
2ovq 1 P63208 85.62 1e-89 X-RAY
 2007-04-24 ILE A:4 A:1004 32.0 0.183 E -112.4 158.1 32.0 0.183 0.0
2ovr 1 P63208 85.62 1e-89 X-RAY
 2007-04-24 ILE A:4 A:1004 34.0 0.194 E -107.6 163.6 34.0 0.194 0.0
6m90 2 P63208 85.53 4e-89 X-RAY
 2019-04-03 ILE B:3 B:4 8.0 NA E -119.7 139.5 8.0 NA NA
6m91 2 P63208 85.53 4e-89 X-RAY
 2019-04-03 ILE B:3 B:4 7.0 NA E -124.8 137.8 7.0 NA NA
6m92 2 P63208 85.53 4e-89 X-RAY
 2019-04-03 ILE B:3 B:4 18.0 0.103 E -125.9 137.5 18.0 0.103 0.0
6m93 2 P63208 85.53 4e-89 X-RAY
 2019-04-03 ILE B:3 B:4 18.0 0.103 E -125.0 137.5 18.0 0.103 0.0
6m94 2 P63208 85.53 4e-89 X-RAY
 2019-04-03 ILE B:3 B:4 28.0 0.16 E -123.8 148.3 28.0 0.16 0.0
3l2o 1 P63208 85.0 6e-89 X-RAY
 2010-02-23 ILE A:4 A:1004 23.0 0.131 E -128.5 141.4 23.0 0.131 0.0 HOH
 7.658
 O
 O
5vzt 1 P63208 85.0 6e-89 X-RAY
 2018-01-17 ILE A:4 A:1004 15.0 0.086 E -129.2 167.9 15.0 0.086 0.0 HOH
 5.899
 CG2
 O
ILE C:4 C:1004 22.0 0.126 E -140.6 155.7 NA NA NA
5vzu 1 P63208 85.0 6e-89 X-RAY
 2018-01-17 ILE A:4 A:1004 21.0 0.12 E -126.5 170.5 21.0 0.12 0.0
ILE C:4 C:1004 25.0 0.143 E -141.1 155.5 NA NA NA
1fs1 2 P63208 95.92 1e-88 X-RAY
 2000-11-29 ILE B:4 B:4 24.0 0.137 E -134.4 159.3 24.0 0.137 0.0 HOH
 4.020
 CB
 O
ILE D:4 D:4 30.0 0.171 E -136.5 159.8 30.0 0.171 0.0 HOH
 3.806
 CA
 O
1fs2 2 P63208 95.92 1e-88 X-RAY
 2000-11-29 ILE B:4 B:4 11.0 0.063 E -109.6 162.1 11.0 0.063 0.0
ILE D:4 D:4 11.0 0.063 E -111.2 159.7 11.0 0.063 0.0
5v4b 1 P63208 84.38 4e-88 X-RAY
 2017-09-20 ILE A:4 A:1004 29.0 0.166 E -137.5 159.9 29.0 0.166 0.0 HOH
 7.119
 O
 O
1ldk 4 P63208 95.68 2e-82 X-RAY
 2002-05-08 ILE D:3 D:2004 14.0 0.08 B -106.1 150.4 14.0 0.08 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p63208-f1 1 P63208 96.88 1e-100 ILE A:4 A:4 15.0 0.086 E -125.6 157.1