Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 141384525 . C A CCDS4272.1:NM_005471.4:c.566gGg>gTg_NP_005462.1:p.189G>V Homo sapiens glucosamine-6-phosphate deaminase 1 (GNPDA1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 100.0 0.0 X-RAY
 2003-09-23 GLY A:189 A:189 0.0 0.0 -87.6 173.6 0.0 0.0 0.0 16G
HOH
 7.497
6.339
 CA
CA
 O2P
O
GLY B:189 B:189 0.0 0.0 -88.8 171.5 0.0 0.0 0.0 16G
HOH
 7.506
6.372
 CA
CA
 O2P
O
GLY C:189 C:189 0.0 0.0 -88.6 172.4 0.0 0.0 0.0 16G
HOH
 7.487
6.414
 CA
CA
 O2P
O
GLY D:189 D:189 0.0 0.0 -86.8 174.4 0.0 0.0 0.0 16G
HOH
 7.572
6.380
 CA
CA
 O2P
O
GLY E:189 E:189 0.0 0.0 -90.3 175.8 0.0 0.0 0.0 16G
HOH
 7.465
6.387
 CA
CA
 O2P
O
GLY F:189 F:189 0.0 0.0 -89.0 175.3 0.0 0.0 0.0 16G
HOH
 7.487
6.369
 CA
CA
 O2P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46926-f1 1 P46926 100.0 0.0 GLY A:189 A:189 0.0 0.0 -78.3 165.8
af-q8tdq7-f1 1 Q8TDQ7 87.96 0.0 GLY A:189 A:189 0.0 0.0 -74.0 162.7