Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 141384579 . G A CCDS4272.1:NM_005471.4:c.512gCt>gTt_NP_005462.1:p.171A>V Homo sapiens glucosamine-6-phosphate deaminase 1 (GNPDA1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 100.0 0.0 X-RAY
 2003-09-23 ALA A:171 A:171 10.0 0.087 G -63.8 -20.7 10.0 0.087 0.0 SO4
AGP
HOH
 9.754
9.943
3.853
 N
N
N
 O1
O1P
O
ALA B:171 B:171 7.0 0.061 G -56.2 -39.6 7.0 0.061 0.0 SO4
AGP
HOH
 9.791
9.731
3.534
 N
N
CB
 O1
O1P
O
ALA C:171 C:171 8.0 0.07 G -57.5 -28.2 8.0 0.07 0.0 SO4
AGP
HOH
 9.976
7.876
3.579
 N
N
N
 O1
O1
O
ALA D:171 D:171 6.0 0.052 G -57.6 -29.0 6.0 0.052 0.0 SO4
AGP
HOH
 9.357
9.255
3.704
 N
N
C
 O1
O1P
O
ALA E:171 E:171 6.0 0.052 G -56.1 -32.6 6.0 0.052 0.0 SO4
AGP
HOH
 9.851
9.914
3.557
 N
N
N
 O1
O1P
O
ALA F:171 F:171 4.0 0.035 G -59.7 -25.7 4.0 0.035 0.0 SO4
AGP
HOH
 9.474
9.198
3.729
 N
N
N
 O1
O1P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46926-f1 1 P46926 100.0 0.0 ALA A:171 A:171 7.0 0.061 G -52.2 -29.3
af-q8tdq7-f1 1 Q8TDQ7 87.96 0.0 ALA A:171 A:171 8.0 0.07 G -51.9 -33.6