Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 141385873 . G A CCDS4272.1:NM_005471.4:c.245cCg>cTg_NP_005462.1:p.82P>L Homo sapiens glucosamine-6-phosphate deaminase 1 (GNPDA1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 100.0 0.0 X-RAY
 2003-09-23 PRO A:82 A:82 99.0 0.683 T -58.1 -15.6 99.0 0.683 0.0 HOH
 2.695
 O
 O
PRO B:82 B:82 93.0 0.641 T -57.6 -23.4 93.0 0.641 0.0 HOH
 2.693
 O
 O
PRO C:82 C:82 91.0 0.628 T -56.0 -23.3 91.0 0.628 0.0 HOH
 2.631
 O
 O
PRO D:82 D:82 88.0 0.607 T -56.6 -21.9 88.0 0.607 0.0 HOH
 4.533
 O
 O
PRO E:82 E:82 94.0 0.648 T -56.3 -28.5 94.0 0.648 0.0 HOH
 2.731
 O
 O
PRO F:82 F:82 85.0 0.586 T -54.8 -24.7 85.0 0.586 0.0 HOH
 2.848
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46926-f1 1 P46926 100.0 0.0 PRO A:82 A:82 86.0 0.593 T -58.7 -31.6
af-q8tdq7-f1 1 Q8TDQ7 87.96 0.0 PRO A:82 A:82 88.0 0.607 T -56.2 -34.5