Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 141387414 . C A CCDS4272.1:NM_005471.4:c.176gGg>gTg_NP_005462.1:p.59G>V Homo sapiens glucosamine-6-phosphate deaminase 1 (GNPDA1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 100.0 0.0 X-RAY
 2003-09-23 GLY A:59 A:59 30.0 0.4 T 78.5 21.5 30.0 0.4 0.0 HOH
 2.885
 O
 O
GLY B:59 B:59 31.0 0.413 T 79.7 17.7 31.0 0.413 0.0 HOH
 2.821
 O
 O
GLY C:59 C:59 31.0 0.413 T 82.4 17.0 31.0 0.413 0.0 SO4
HOH
 7.791
2.651
 C
O
 O3
O
GLY D:59 D:59 31.0 0.413 T 75.4 19.5 31.0 0.413 0.0 HOH
 2.817
 O
 O
GLY E:59 E:59 32.0 0.427 T 73.9 22.6 32.0 0.427 0.0 HOH
 2.927
 O
 O
GLY F:59 F:59 29.0 0.387 T 76.6 25.4 29.0 0.387 0.0 HOH
 2.823
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46926-f1 1 P46926 100.0 0.0 GLY A:59 A:59 52.0 0.693 T 79.9 15.2
af-q8tdq7-f1 1 Q8TDQ7 87.96 0.0 GLY A:59 A:59 29.0 0.387 T 75.3 17.3