Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 141391595 . C A CCDS4272.1:NM_005471.4:c.6aaG>aaT_NP_005462.1:p.2K>N Homo sapiens glucosamine-6-phosphate deaminase 1 (GNPDA1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 100.0 0.0 X-RAY
 2003-09-23 LYS A:2 A:2 67.0 0.335 E -113.7 118.8 67.0 0.335 0.0 GLC
16G
HOH
 9.240
3.700
2.979
 NZ
CE
NZ
 O6
O1
O
LYS B:2 B:2 56.0 0.28 E -114.1 117.2 56.0 0.28 0.0 16G
HOH
 3.713
2.679
 CE
NZ
 O1
O
LYS C:2 C:2 57.0 0.285 E -116.1 126.4 57.0 0.285 0.0 16G
HOH
 3.647
2.697
 CE
NZ
 O1
O
LYS D:2 D:2 60.0 0.3 E -114.6 121.5 60.0 0.3 0.0 16G
HOH
 3.763
2.777
 CE
NZ
 O1
O
LYS E:2 E:2 65.0 0.325 E -116.1 115.5 65.0 0.325 0.0 16G
HOH
 3.446
2.977
 CE
NZ
 O1
O
LYS F:2 F:2 59.0 0.295 E -114.0 123.8 59.0 0.295 0.0 16G
HOH
 3.638
2.707
 CE
NZ
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46926-f1 1 P46926 100.0 0.0 LYS A:2 A:2 59.0 0.295 E -116.2 140.5
af-q8tdq7-f1 1 Q8TDQ7 87.96 0.0 ARG A:2 A:2 94.0 0.418 E -109.0 139.6