Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 153789303 . C A CCDS4325.1:NM_198321.3:c.1367cCg>cAg_NP_938080.1:p.456P>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 10 (GALNT10), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2d7i 1 Q86SR1 100.0 0.0 X-RAY
 2006-11-07 PRO A:423 A:456 89.0 0.614 -60.3 158.9 89.0 0.614 0.0 NAG
HOH
 3.274
4.016
 CG
O
 C8
O
2d7r 1 Q86SR1 100.0 0.0 X-RAY
 2006-11-07 PRO A:423 A:456 87.0 0.6 -57.5 169.8 87.0 0.6 0.0 NAG
HOH
 3.440
3.791
 CG
CB
 N2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q86sr1-f1 1 Q86SR1 100.0 0.0 PRO A:456 A:456 84.0 0.579 -62.9 150.7