Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180218699 . G A CCDS4458.1:NM_001114617.1:c.1273Cgg>Tgg_NP_001108089.1:p.425R>W Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 ARG A:328 A:427 154.0 0.684 T 50.6 43.1 154.0 0.684 0.0 HOH
 2.370
 NH2
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 ARG A:328 A:427 144.0 0.64 T 50.8 43.9 144.0 0.64 0.0 HOH
 2.682
 N
 O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 ARG A:323 A:427 152.0 0.676 T 51.5 40.3 152.0 0.676 0.0 HOH
 2.476
 NE
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ARG A:322 A:427 149.0 0.662 T 54.5 42.8 149.0 0.662 0.0 HOH
 2.766
 N
 O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ARG A:322 A:427 150.0 0.667 T 50.8 45.0 150.0 0.667 0.0 HOH
 2.865
 N
 O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ARG A:322 A:427 150.0 0.667 T 49.4 44.9 150.0 0.667 0.0 HOH
 2.779
 N
 O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ARG A:322 A:427 145.0 0.644 T 49.6 42.8 145.0 0.644 0.0 HOH
 2.430
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 ARG A:425 A:425 159.0 0.707 T 53.2 38.6