Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219115 . G A CCDS4458.1:NM_001114617.1:c.857gCc>gTc_NP_001108089.1:p.286A>V Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 ALA A:189 A:288 13.0 0.113 S -160.9 161.7 13.0 0.113 0.0 HOH
 2.781
 O
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 ALA A:189 A:288 14.0 0.122 S -165.6 163.7 14.0 0.122 0.0 UD1
HOH
 5.783
2.929
 C
O
 O6'
O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 ALA A:184 A:288 12.0 0.104 S -163.2 163.8 12.0 0.104 0.0 HOH
 2.732
 O
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ALA A:183 A:288 14.0 0.122 S -163.4 163.8 14.0 0.122 0.0 UPG
GOL
HOH
 5.956
6.039
3.779
 C
C
C
 O6'
O2
O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ALA A:183 A:288 11.0 0.096 S -164.9 163.3 11.0 0.096 0.0 U2F
HOH
 7.344
2.903
 C
O
 O3
O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ALA A:183 A:288 12.0 0.104 S -163.2 166.1 12.0 0.104 0.0 GOL
HOH
 8.392
3.757
 C
C
 O3
O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ALA A:183 A:288 12.0 0.104 S -162.0 161.0 12.0 0.104 0.0 UDM
GOL
HOH
 5.735
5.868
3.802
 C
C
C
 O6'
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 ALA A:286 A:286 10.0 0.087 S -160.3 171.0