Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219119 . T A CCDS4458.1:NM_001114617.1:c.853Aag>Tag_NP_001108089.1:p.285K>* Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 LYS A:188 A:287 129.0 0.645 S -72.4 -29.8 129.0 0.645 0.0 HOH
 2.632
 O
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 LYS A:188 A:287 154.0 0.77 S -80.7 -19.1 154.0 0.77 0.0 UD1
HOH
 8.279
2.686
 O
O
 O6'
O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 LYS A:183 A:287 130.0 0.65 S -72.0 -29.4 130.0 0.65 0.0 HOH
 2.606
 O
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LYS A:182 A:287 145.0 0.725 S -78.4 -23.4 145.0 0.725 0.0 UPG
GOL
HOH
 8.414
9.570
2.729
 O
C
O
 O6'
O2
O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LYS A:182 A:287 131.0 0.655 S -73.6 -27.2 131.0 0.655 0.0 HOH
 2.689
 O
 O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LYS A:182 A:287 140.0 0.7 S -73.9 -27.0 140.0 0.7 0.0 HOH
 2.657
 O
 O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LYS A:182 A:287 134.0 0.67 S -72.5 -28.2 134.0 0.67 0.0 UDM
GOL
HOH
 8.304
9.329
2.686
 O
C
O
 O6'
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 LYS A:285 A:285 171.0 0.855 S -74.5 -24.4