Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219123 . C A CCDS4458.1:NM_001114617.1:c.849tgG>tgT_NP_001108089.1:p.283W>C Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 TRP A:186 A:285 23.0 0.09 -50.5 133.5 23.0 0.09 0.0 HOH
 2.890
 O
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 TRP A:186 A:285 12.0 0.047 -50.5 128.7 12.0 0.047 0.0 UD1
HOH
 8.150
3.340
 CZ2
O
 O4'
O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 TRP A:181 A:285 16.0 0.063 -50.4 134.9 16.0 0.063 0.0 HOH
 3.658
 CD1
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 TRP A:180 A:285 22.0 0.086 -52.5 132.4 22.0 0.086 0.0 UPG
HOH
 8.030
3.620
 CZ2
CD1
 O4'
O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 TRP A:180 A:285 29.0 0.114 -52.6 132.0 29.0 0.114 0.0 HOH
 3.594
 CD1
 O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 TRP A:180 A:285 25.0 0.098 -51.8 132.2 25.0 0.098 0.0 HOH
 3.596
 CD1
 O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 TRP A:180 A:285 25.0 0.098 -51.5 132.8 25.0 0.098 0.0 UDM
HOH
 8.014
2.929
 CZ2
O
 O4'
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 TRP A:283 A:283 28.0 0.11 -56.8 134.5