Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219133 . T A CCDS4458.1:NM_001114617.1:c.839gAg>gTg_NP_001108089.1:p.280E>V Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 GLU A:183 A:282 48.0 0.253 G -50.4 -45.7 48.0 0.253 0.0 HOH
 2.815
 OE2
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 GLU A:183 A:282 49.0 0.258 G -46.6 -43.3 49.0 0.258 0.0 HOH
 2.512
 OE2
 O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 GLU A:178 A:282 45.0 0.237 G -48.9 -46.9 45.0 0.237 0.0 HOH
 2.590
 OE2
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 GLU A:177 A:282 55.0 0.289 G -54.3 -42.6 55.0 0.289 0.0 HOH
 4.322
 OE1
 O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 GLU A:177 A:282 32.0 0.168 G -56.5 -43.3 32.0 0.168 0.0 HOH
 2.637
 OE1
 O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 GLU A:177 A:282 35.0 0.184 G -55.6 -45.0 35.0 0.184 0.0 HOH
 2.415
 OE2
 O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 GLU A:177 A:282 38.0 0.2 G -54.4 -44.1 38.0 0.2 0.0 HOH
 2.683
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 GLU A:280 A:280 20.0 0.105 G -58.2 -42.9