Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219136 . A C CCDS4458.1:NM_001114617.1:c.836cTg>cGg_NP_001108089.1:p.279L>R Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 LEU A:182 A:281 1.0 0.006 H -85.1 -36.9 1.0 0.006 0.0 HOH
 3.640
 CD2
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 LEU A:182 A:281 1.0 0.006 H -83.7 -45.1 1.0 0.006 0.0 HOH
 3.521
 CD2
 O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 LEU A:177 A:281 1.0 0.006 H -84.5 -38.1 1.0 0.006 0.0 HOH
 3.676
 CD2
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LEU A:176 A:281 1.0 0.006 H -84.7 -33.6 1.0 0.006 0.0 GOL
HOH
 8.479
3.579
 CG
CD2
 C3
O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LEU A:176 A:281 1.0 0.006 H -82.9 -35.0 1.0 0.006 0.0 GOL
HOH
 8.690
3.676
 N
CD2
 O2
O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LEU A:176 A:281 1.0 0.006 H -81.1 -35.8 1.0 0.006 0.0 GOL
HOH
 8.462
3.659
 CG
CD2
 C3
O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 LEU A:176 A:281 1.0 0.006 H -81.3 -37.1 1.0 0.006 0.0 GOL
HOH
 8.609
3.759
 N
CD2
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 LEU A:279 A:279 1.0 0.006 H -81.3 -37.9