Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219380 . G A CCDS4458.1:NM_001114617.1:c.592Cgg>Tgg_NP_001108089.1:p.198R>W Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 HIS A:101 A:200 106.0 0.544 I -100.2 -57.6 106.0 0.544 0.0 HOH
 2.802
 ND1
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 HIS A:101 A:200 111.0 0.569 I -104.7 -39.7 111.0 0.569 0.0 HOH
 2.669
 ND1
 O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 HIS A:96 A:200 104.0 0.533 I -99.3 -56.6 104.0 0.533 0.0 HOH
 2.626
 ND1
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 HIS A:95 A:200 117.0 0.6 I -100.9 -47.1 117.0 0.6 0.0 HOH
 2.615
 ND1
 O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 HIS A:95 A:200 115.0 0.59 I -106.7 -42.4 115.0 0.59 0.0 HOH
 2.658
 ND1
 O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 HIS A:95 A:200 113.0 0.579 I -103.5 -42.1 113.0 0.579 0.0 HOH
 3.424
 CE1
 O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 HIS A:95 A:200 115.0 0.59 I -106.9 -42.1 115.0 0.59 0.0 HOH
 2.719
 ND1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 ARG A:198 A:198 152.0 0.676 I -100.8 -44.7