Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219518 . T A CCDS4458.1:NM_001114617.1:c.454Atc>Ttc_NP_001108089.1:p.152I>F Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 ILE A:55 A:154 1.0 0.006 H -61.6 -43.4 1.0 0.006 0.0 HOH
 2.963
 O
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 ILE A:55 A:154 0.0 0.0 H -66.2 -48.6 0.0 0.0 0.0 UD1
HOH
 8.920
3.125
 CD1
O
 O2'
O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 ILE A:50 A:154 1.0 0.006 H -61.4 -43.2 1.0 0.006 0.0 HOH
 2.862
 O
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ILE A:49 A:154 0.0 0.0 H -61.6 -47.1 0.0 0.0 0.0 UPG
GOL
HOH
 8.894
9.713
2.993
 CD1
CG2
O
 O2C
O3
O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ILE A:49 A:154 1.0 0.006 H -63.4 -43.2 1.0 0.006 0.0 U2F
GOL
HOH
 8.923
9.960
2.999
 CD1
CG2
O
 O2'
O3
O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ILE A:49 A:154 1.0 0.006 H -63.1 -45.7 1.0 0.006 0.0 UDP
GOL
HOH
 8.789
9.863
2.935
 CD1
CG2
O
 O2'
O1
O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 ILE A:49 A:154 1.0 0.006 H -60.8 -45.9 1.0 0.006 0.0 UDM
GOL
HOH
 8.989
9.933
2.945
 CD1
CG2
O
 O2'
O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 ILE A:152 A:152 0.0 0.0 H -67.1 -45.3