Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 180219565 . G A CCDS4458.1:NM_001114617.1:c.407cCc>cTc_NP_001108089.1:p.136P>L Homo sapiens mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1fo9 1 P27115 94.44 0.0 X-RAY
 2001-04-25 PRO A:39 A:138 21.0 0.145 -63.3 141.6 21.0 0.145 0.0 HOH
 3.629
 CA
 O
1foa 1 P27115 94.44 0.0 X-RAY
 2001-05-16 PRO A:39 A:138 23.0 0.159 -69.5 141.4 23.0 0.159 0.0 GOL
HOH
 3.820
3.533
 CA
CB
 O2
O
1fo8 1 P27115 94.44 0.0 X-RAY
 2001-04-25 PRO A:34 A:138 21.0 0.145 -62.5 141.6 21.0 0.145 0.0 HOH
 3.657
 CA
 O
2am3 1 P27115 94.44 0.0 X-RAY
 2006-06-27 PRO A:33 A:138 22.0 0.152 -64.2 141.6 22.0 0.152 0.0 GOL
HOH
 3.866
4.136
 CA
CG
 O2
O
2am4 1 P27115 94.44 0.0 X-RAY
 2006-06-27 PRO A:33 A:138 22.0 0.152 -65.3 143.4 22.0 0.152 0.0 GOL
HOH
 3.740
3.778
 CA
CB
 O2
O
2am5 1 P27115 94.44 0.0 X-RAY
 2006-06-27 PRO A:33 A:138 22.0 0.152 -65.6 141.8 22.0 0.152 0.0 GOL
HOH
 3.692
3.562
 CA
CB
 O2
O
2apc 1 P27115 94.44 0.0 X-RAY
 2006-06-27 PRO A:33 A:138 21.0 0.145 -65.3 143.2 21.0 0.145 0.0 GOL
HOH
 3.728
3.715
 CA
CB
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p26572-f1 1 P26572 100.0 0.0 PRO A:136 A:136 29.0 0.2 -61.0 135.5