Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41739538 . C A CCDS3937.1:NM_000436.3:c.1475gGc>gTc_NP_000427.1:p.492G>V Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 GLY A:454 A:492 78.0 1.0 T 98.5 -27.8 78.0 1.0 0.0
GLY B:454 B:492 82.0 1.0 T 91.7 -47.4 82.0 1.0 0.0
GLY C:454 C:492 77.0 1.0 T 101.2 4.7 NA NA NA
GLY D:454 NA:NA DO NA DO DO DO NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 GLY A:453 A:453 72.0 0.96 T 119.6 -29.6 72.0 0.96 0.0 HOH
 2.802
 N
 O
GLY B:453 B:453 68.0 0.907 T 115.0 -28.8 68.0 0.907 0.0 HOH
 6.276
 N
 O
GLY C:453 C:453 70.0 0.933 T 119.0 -28.6 NA NA NA
GLY D:453 D:453 71.0 0.947 T 117.5 -25.8 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 GLY A:453 A:492 77.0 1.0 T 114.0 -24.3 77.0 1.0 0.0 HOH
 3.747
 N
 O
GLY B:453 B:492 77.0 1.0 T 106.4 -23.0 77.0 1.0 0.0 HOH
 2.460
 N
 O
GLY C:453 C:492 76.0 1.0 T 119.0 -32.8 NA NA NA
GLY D:453 D:492 77.0 1.0 T 117.9 -24.8 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 GLY A:453 A:453 60.0 0.8 T 92.0 -18.2 60.0 0.8 0.0 HOH
 3.935
 N
 O
GLY B:453 B:453 76.0 1.0 T 107.5 -29.0 76.0 1.0 0.0 HOH
 2.513
 O
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 GLY A:453 A:453 80.0 1.0 T 94.4 -27.2 80.0 1.0 0.0 HOH
 2.801
 N
 O
GLY B:453 D:453 79.0 1.0 T 105.7 -26.6 NA NA NA
GLY C:453 C:453 66.0 0.88 T 94.9 0.9 NA NA NA
GLY D:453 B:453 63.0 0.84 T 99.3 -34.4 63.0 0.84 0.0 HOH
 2.971
 O
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 GLY A:453 A:453 80.0 1.0 T 89.9 -18.8 80.0 1.0 0.0 HOH
 6.236
 N
 O
GLY B:453 B:453 80.0 1.0 T 89.9 -18.4 80.0 1.0 0.0
GLY C:453 C:453 81.0 1.0 T 89.8 -18.2 NA NA NA
GLY D:453 D:453 80.0 1.0 T 89.0 -18.2 NA NA NA
GLY E:453 E:453 74.0 0.987 S 101.3 -61.3 NA NA NA
GLY F:453 F:453 37.0 0.493 S -87.4 74.9 NA NA NA
GLY G:453 G:453 67.0 0.893 S 101.5 -62.7 NA NA NA
GLY H:453 H:453 69.0 0.92 S 102.8 -62.3 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 GLY A:453 A:453 82.0 1.0 T 90.4 -13.1 82.0 1.0 0.0 HOH
 5.336
 N
 O
GLY B:453 B:453 81.0 1.0 T 89.1 -9.0 81.0 1.0 0.0 HOH
 2.762
 O
 O
GLY C:453 C:453 78.0 1.0 T 90.0 -12.8 NA NA NA
GLY D:453 D:453 81.0 1.0 T 84.5 -13.6 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 GLY A:453 A:453 80.0 1.0 T 89.2 -13.4 80.0 1.0 0.0
GLY B:453 B:453 76.0 1.0 T 104.5 -32.6 76.0 1.0 0.0 HOH
 6.218
 N
 O
GLY C:453 C:453 77.0 1.0 T 101.7 -27.1 NA NA NA
GLY D:453 D:453 75.0 1.0 T 97.1 -40.9 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 GLY A:447 A:453 71.0 0.947 T 102.3 -16.5 71.0 0.947 0.0 HOH
 3.342
 O
 O
GLY B:447 B:453 70.0 0.933 T 104.1 -20.5 70.0 0.933 0.0 HOH
 6.006
 O
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 GLY A:447 A:453 78.0 1.0 T 109.8 -33.3 78.0 1.0 0.0 HOH
 6.724
 N
 O
GLY B:447 B:453 75.0 1.0 T 111.3 -33.4 75.0 1.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 GLY A:492 A:492 74.0 0.987 T 86.1 -7.6