Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41749681 . C A CCDS3937.1:NM_000436.3:c.1367tGt>tTt_NP_000427.1:p.456C>F Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 CYS A:418 A:456 23.0 0.17 -66.2 148.4 23.0 0.17 0.0 HOH
 3.455
 O
 O
CYS B:418 B:456 22.0 0.163 -64.8 155.3 22.0 0.163 0.0 HOH
 2.632
 N
 O
CYS C:418 C:456 24.0 0.178 -66.3 150.8 NA NA NA
CYS D:418 D:456 27.0 0.2 -65.0 147.2 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 CYS A:417 A:417 24.0 0.178 -71.1 154.4 24.0 0.178 0.0 HOH
 6.680
 C
 O
CYS B:417 B:417 25.0 0.185 -71.4 154.9 25.0 0.185 0.0 HOH
 2.787
 N
 O
CYS C:417 C:417 23.0 0.17 -70.7 155.4 NA NA NA
CYS D:417 D:417 24.0 0.178 -71.0 155.5 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 CYS A:417 A:456 50.0 0.37 -86.6 94.6 50.0 0.37 0.0
CYS B:417 NA:NA DO NA DO DO DO NA NA NA
CYS C:417 NA:NA DO NA DO DO DO NA NA NA
CYS D:417 D:456 38.0 0.281 -61.6 133.5 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 CYS A:417 A:417 22.0 0.163 -70.2 150.4 22.0 0.163 0.0 HOH
 2.793
 N
 O
CYS B:417 B:417 20.0 0.148 -68.2 151.6 20.0 0.148 0.0 HOH
 2.747
 N
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 CYS A:417 A:417 4.0 0.03 -66.0 145.0 4.0 0.03 0.0 HOH
 2.822
 N
 O
CYS B:417 D:417 20.0 0.148 -71.2 147.4 NA NA NA
CYS C:417 C:417 24.0 0.178 -68.5 144.7 NA NA NA
CYS D:417 B:417 14.0 0.104 -67.1 147.3 14.0 0.104 0.0 HOH
 2.838
 N
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 CYS A:417 A:417 24.0 0.178 -65.6 143.1 24.0 0.178 0.0 HOH
 2.260
 O
 O
CYS B:417 B:417 24.0 0.178 -64.6 144.2 24.0 0.178 0.0 HOH
 3.012
 N
 O
CYS C:417 C:417 24.0 0.178 -64.8 143.5 NA NA NA
CYS D:417 D:417 25.0 0.185 -65.6 143.9 NA NA NA
CYS E:417 E:417 19.0 0.141 -80.0 135.3 NA NA NA
CYS F:417 F:417 18.0 0.133 -79.7 135.3 NA NA NA
CYS G:417 G:417 19.0 0.141 -80.2 135.4 NA NA NA
CYS H:417 H:417 17.0 0.126 -80.1 134.7 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 CYS A:417 A:417 24.0 0.178 -70.7 141.8 24.0 0.178 0.0 HOH
 2.968
 O
 O
CYS B:417 B:417 24.0 0.178 -75.5 145.7 24.0 0.178 0.0 HOH
 6.259
 N
 O
CYS C:417 C:417 27.0 0.2 -71.3 149.0 NA NA NA
CYS D:417 D:417 22.0 0.163 -64.0 135.8 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 CYS A:417 A:417 14.0 0.104 -63.1 152.0 14.0 0.104 0.0 HOH
 2.600
 N
 O
CYS B:417 B:417 22.0 0.163 -77.5 151.4 22.0 0.163 0.0 HOH
 2.713
 N
 O
CYS C:417 C:417 13.0 0.096 -66.9 149.7 NA NA NA
CYS D:417 D:417 20.0 0.148 -73.7 156.7 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 CYS A:411 A:417 19.0 0.141 -71.0 154.3 12.0 0.089 0.052 A:Q29551:0.052
 HOH
 2.690
 N
 O
CYS B:411 B:417 19.0 0.141 -66.4 151.4 19.0 0.141 0.0 HOH
 2.588
 N
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 CYS A:411 A:417 22.0 0.163 -76.7 159.8 22.0 0.163 0.0 HOH
 8.118
 CB
 O
CYS B:411 B:417 23.0 0.17 -74.7 160.7 23.0 0.17 0.0 HOH
 7.175
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 CYS A:456 A:456 22.0 0.163 -61.7 143.6