Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41749690 . A C CCDS3937.1:NM_000436.3:c.1358aTg>aGg_NP_000427.1:p.453M>R Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 MET A:415 A:453 22.0 0.119 E -153.6 176.0 22.0 0.119 0.0 HOH
 4.191
 CE
 O
MET B:415 B:453 23.0 0.124 E -146.3 176.8 23.0 0.124 0.0 HOH
 3.341
 CB
 O
MET C:415 C:453 22.0 0.119 E -148.4 171.5 NA NA NA
MET D:415 D:453 22.0 0.119 E -154.3 168.8 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 MSE A:414 A:414 33.0 0.178 E -160.4 179.2 33.0 0.178 0.0 HOH
 3.147
 CE
 O
MSE B:414 B:414 33.0 0.178 E -160.0 179.4 33.0 0.178 0.0 HOH
 4.296
 SE
 O
MSE C:414 C:414 33.0 0.178 E -159.0 179.5 NA NA NA
MSE D:414 D:414 33.0 0.178 E -160.4 179.6 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 MET A:414 A:453 16.0 0.086 -98.6 -165.4 16.0 0.086 0.0
MET B:414 NA:NA DO NA DO DO DO NA NA NA
MET C:414 NA:NA DO NA DO DO DO NA NA NA
MET D:414 D:453 15.0 0.081 E -132.0 179.2 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 MET A:414 A:414 25.0 0.135 E -149.2 -177.8 25.0 0.135 0.0 HOH
 3.158
 CB
 O
MET B:414 B:414 23.0 0.124 E -146.0 179.3 23.0 0.124 0.0 HOH
 3.809
 CE
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 MET A:414 A:414 32.0 0.173 E -149.0 172.2 32.0 0.173 0.0 HOH
 5.465
 CE
 O
MET B:414 D:414 43.0 0.232 E -162.9 179.5 NA NA NA
MET C:414 C:414 28.0 0.151 E -152.8 170.3 NA NA NA
MET D:414 B:414 29.0 0.157 E -160.4 -176.5 29.0 0.157 0.0 HOH
 3.344
 CB
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 MET A:414 A:414 19.0 0.103 E -155.3 172.8 19.0 0.103 0.0 HOH
 6.992
 O
 O
MET B:414 B:414 20.0 0.108 E -154.4 173.6 20.0 0.108 0.0 HOH
 5.110
 N
 O
MET C:414 C:414 19.0 0.103 E -155.8 172.7 NA NA NA
MET D:414 D:414 19.0 0.103 E -154.7 174.4 NA NA NA
MET E:414 E:414 25.0 0.135 E -166.2 173.1 NA NA NA
MET F:414 F:414 26.0 0.141 E -167.1 172.2 NA NA NA
MET G:414 G:414 27.0 0.146 E -166.6 173.0 NA NA NA
MET H:414 H:414 26.0 0.141 B -165.9 173.1 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 MET A:414 A:414 23.0 0.124 E -146.8 -179.8 23.0 0.124 0.0 HOH
 3.652
 CE
 O
MET B:414 B:414 28.0 0.151 E -147.1 176.3 28.0 0.151 0.0 HOH
 4.342
 CE
 O
MET C:414 C:414 23.0 0.124 E -145.7 170.6 NA NA NA
MET D:414 D:414 22.0 0.119 E -140.3 179.2 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 MET A:414 A:414 26.0 0.141 E -146.9 176.8 26.0 0.141 0.0 HOH
 3.168
 CE
 O
MET B:414 B:414 24.0 0.13 E -144.1 -179.1 24.0 0.13 0.0 HOH
 5.789
 N
 O
MET C:414 C:414 25.0 0.135 E -144.7 179.4 NA NA NA
MET D:414 D:414 27.0 0.146 E -160.0 177.3 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 MET A:408 A:414 39.0 0.211 E -155.6 -175.8 39.0 0.211 0.0 HOH
 2.764
 CE
 O
MET B:408 B:414 41.0 0.222 E -151.2 -173.9 41.0 0.222 0.0 HOH
 3.037
 CE
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 MET A:408 A:414 47.0 0.254 E -134.5 -160.1 47.0 0.254 0.0 HG
HOH
 8.916
6.734
 CG
O
 HG
O
MET B:408 B:414 46.0 0.249 E -135.3 -161.6 46.0 0.249 0.0 HG
HOH
 9.267
9.406
 CG
O
 HG
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 MET A:453 A:453 27.0 0.146 E -154.5 171.8