Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41794170 . C A CCDS3937.1:NM_000436.3:c.1183Gat>Tat_NP_000427.1:p.395D>Y Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 ASP A:357 A:395 72.0 0.48 S -78.3 -43.0 72.0 0.48 0.0 HOH
 2.483
 OD2
 O
ASP B:357 B:395 69.0 0.46 S -81.7 -38.6 69.0 0.46 0.0 HOH
 3.873
 OD1
 O
ASP C:357 C:395 70.0 0.467 S -74.0 -37.2 NA NA NA
ASP D:357 D:395 75.0 0.5 S -77.1 -38.4 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 ASN A:356 A:356 72.0 0.45 S -76.8 -44.5 72.0 0.45 0.0 HOH
 2.938
 OD1
 O
ASN B:356 B:356 72.0 0.45 S -77.5 -42.8 72.0 0.45 0.0 HOH
 2.933
 ND2
 O
ASN C:356 C:356 75.0 0.469 S -76.6 -44.1 NA NA NA
ASN D:356 D:356 69.0 0.431 S -75.8 -45.1 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 ASN A:356 A:395 73.0 0.456 S -70.6 -46.0 73.0 0.456 0.0 HOH
 2.867
 ND2
 O
ASN B:356 B:395 69.0 0.431 S -67.4 -52.8 69.0 0.431 0.0 HOH
 3.962
 ND2
 O
ASN C:356 C:395 72.0 0.45 S -69.9 -48.4 NA NA NA
ASN D:356 D:395 67.0 0.419 -71.3 -53.6 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 ASN A:356 A:356 73.0 0.456 S -78.6 -34.7 73.0 0.456 0.0 K
HOH
 7.346
2.738
 O
OD1
 K
O
ASN B:356 B:356 70.0 0.438 S -78.9 -33.0 70.0 0.438 0.0 K
HOH
 7.352
2.781
 O
O
 K
O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 ASN A:356 A:356 70.0 0.438 S -82.1 -36.4 70.0 0.438 0.0 HOH
 2.707
 OD1
 O
ASN B:356 D:356 72.0 0.45 S -74.9 -39.2 NA NA NA
ASN C:356 C:356 72.0 0.45 S -81.5 -31.8 NA NA NA
ASN D:356 B:356 76.0 0.475 S -77.1 -39.7 76.0 0.475 0.0 HOH
 2.743
 OD1
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 ASN A:356 A:356 75.0 0.469 S -72.8 -39.4 75.0 0.469 0.0 HOH
 2.761
 OD1
 O
ASN B:356 B:356 75.0 0.469 S -72.3 -41.1 75.0 0.469 0.0 HOH
 2.654
 OD1
 O
ASN C:356 C:356 75.0 0.469 S -72.2 -40.4 NA NA NA
ASN D:356 D:356 71.0 0.444 S -72.1 -40.8 NA NA NA
ASN E:356 E:356 72.0 0.45 -79.9 -35.6 NA NA NA
ASN F:356 F:356 71.0 0.444 -78.1 -38.0 NA NA NA
ASN G:356 G:356 70.0 0.438 -80.1 -36.8 NA NA NA
ASN H:356 H:356 73.0 0.456 S -79.5 -36.8 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 ASN A:356 A:356 70.0 0.438 -80.0 -28.5 70.0 0.438 0.0 HOH
 7.055
 ND2
 O
ASN B:356 B:356 71.0 0.444 S -74.3 -41.7 71.0 0.444 0.0 HOH
 3.672
 ND2
 O
ASN C:356 C:356 62.0 0.388 -74.5 -42.7 NA NA NA
ASN D:356 D:356 67.0 0.419 -73.6 -40.4 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 ASN A:356 A:356 64.0 0.4 S -73.6 -42.9 64.0 0.4 0.0 HOH
 2.833
 OD1
 O
ASN B:356 B:356 60.0 0.375 S -74.1 -40.3 60.0 0.375 0.0 HOH
 3.145
 OD1
 O
ASN C:356 C:356 70.0 0.438 S -77.5 -40.1 NA NA NA
ASN D:356 D:356 69.0 0.431 S -77.2 -36.1 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 ASN A:350 A:356 72.0 0.45 S -79.3 -38.9 72.0 0.45 0.0 K
HOH
 7.456
2.746
 O
OD1
 K
O
ASN B:350 B:356 73.0 0.456 S -77.7 -37.6 73.0 0.456 0.0 K
HOH
 7.507
2.911
 O
OD1
 K
O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 ASN A:350 A:356 72.0 0.45 S -79.2 -34.1 72.0 0.45 0.0 K
HOH
 7.345
5.387
 O
N
 K
O
ASN B:350 B:356 72.0 0.45 S -80.6 -33.4 72.0 0.45 0.0 K
HOH
 7.383
3.079
 O
ND2
 K
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 ASP A:395 A:395 74.0 0.493 S -74.1 -42.3