Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41805696 . C A CCDS3937.1:NM_000436.3:c.928Gct>Tct_NP_000427.1:p.310A>S Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 ALA A:272 A:310 4.0 0.035 G -62.7 -29.5 4.0 0.035 0.0 HOH
 2.854
 O
 O
ALA B:272 B:310 3.0 0.026 G -52.4 -27.5 3.0 0.026 0.0
ALA C:272 C:310 5.0 0.043 G -50.8 -31.1 NA NA NA
ALA D:272 D:310 3.0 0.026 G -59.5 -27.0 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 ALA A:271 A:271 9.0 0.078 G -64.3 -21.2 9.0 0.078 0.0 HOH
 3.016
 O
 O
ALA B:271 B:271 8.0 0.07 G -64.0 -21.0 8.0 0.07 0.0 HOH
 2.832
 O
 O
ALA C:271 C:271 9.0 0.078 G -64.3 -20.5 NA NA NA
ALA D:271 D:271 9.0 0.078 G -64.3 -20.1 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 ALA A:271 A:310 5.0 0.043 T -66.5 -22.9 5.0 0.043 0.0 HOH
 4.319
 O
 O
ALA B:271 B:310 8.0 0.07 G -60.9 -16.6 8.0 0.07 0.0
ALA C:271 C:310 8.0 0.07 G -61.1 -21.6 NA NA NA
ALA D:271 D:310 5.0 0.043 G -62.2 -23.6 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 ALA A:271 A:271 6.0 0.052 G -60.4 -23.0 6.0 0.052 0.0 HOH
 2.711
 O
 O
ALA B:271 B:271 6.0 0.052 G -65.4 -16.7 6.0 0.052 0.0 HOH
 2.547
 O
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 ALA A:271 A:271 7.0 0.061 G -56.9 -26.2 7.0 0.061 0.0 HOH
 2.704
 O
 O
ALA B:271 D:271 8.0 0.07 G -54.7 -24.1 NA NA NA
ALA C:271 C:271 1.0 0.009 G -60.5 -24.9 NA NA NA
ALA D:271 B:271 3.0 0.026 G -56.9 -27.6 3.0 0.026 0.0 HOH
 5.523
 O
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 ALA A:271 A:271 3.0 0.026 G -59.5 -21.2 3.0 0.026 0.0 HOH
 9.005
 CB
 O
ALA B:271 B:271 3.0 0.026 G -58.9 -22.6 3.0 0.026 0.0 HOH
 8.605
 O
 O
ALA C:271 C:271 3.0 0.026 G -59.1 -21.5 NA NA NA
ALA D:271 D:271 3.0 0.026 G -59.2 -23.4 NA NA NA
ALA E:271 E:271 6.0 0.052 G -59.4 -24.3 NA NA NA
ALA F:271 F:271 6.0 0.052 G -59.0 -24.3 NA NA NA
ALA G:271 G:271 6.0 0.052 G -59.5 -23.4 NA NA NA
ALA H:271 H:271 11.0 0.096 G -59.9 -23.6 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 ALA A:271 A:271 7.0 0.061 G -64.1 -22.1 7.0 0.061 0.0 HOH
 3.273
 O
 O
ALA B:271 B:271 6.0 0.052 T -66.9 -19.4 6.0 0.052 0.0
ALA C:271 C:271 8.0 0.07 G -62.2 -20.5 NA NA NA
ALA D:271 D:271 6.0 0.052 T -59.7 -19.6 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 ALA A:271 A:271 6.0 0.052 G -62.9 -19.5 6.0 0.052 0.0 HOH
 7.651
 C
 O
ALA B:271 B:271 7.0 0.061 G -53.6 -28.5 7.0 0.061 0.0 HOH
 8.993
 CB
 O
ALA C:271 C:271 6.0 0.052 G -67.2 -21.7 NA NA NA
ALA D:271 D:271 6.0 0.052 G -57.7 -23.0 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 ALA A:265 A:271 5.0 0.043 G -56.1 -22.5 5.0 0.043 0.0 HOH
 2.834
 O
 O
ALA B:265 B:271 4.0 0.035 G -58.9 -22.3 4.0 0.035 0.0 HOH
 5.569
 O
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 ALA A:265 A:271 4.0 0.035 G -68.0 -20.9 4.0 0.035 0.0
ALA B:265 B:271 4.0 0.035 G -67.4 -20.9 4.0 0.035 0.0 HOH
 7.665
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 ALA A:310 A:310 5.0 0.043 G -60.1 -24.2