Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41805783 . G A CCDS3937.1:NM_000436.3:c.841Cgt>Tgt_NP_000427.1:p.281R>C Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 ARG A:243 A:281 89.0 0.396 B -136.0 103.7 89.0 0.396 0.0 HOH
 3.056
 N
 O
ARG B:243 B:281 93.0 0.413 B -124.9 95.8 93.0 0.413 0.0 HOH
 3.602
 N
 O
ARG C:243 C:281 91.0 0.404 B -130.2 115.0 NA NA NA
ARG D:243 D:281 61.0 NA B -127.1 88.9 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 ARG A:242 A:242 89.0 0.396 -136.3 116.1 89.0 0.396 0.0 HOH
 2.545
 N
 O
ARG B:242 B:242 91.0 0.404 B -137.9 104.5 91.0 0.404 0.0 HOH
 2.921
 O
 O
ARG C:242 C:242 94.0 0.418 B -134.9 104.1 NA NA NA
ARG D:242 D:242 89.0 0.396 B -136.9 115.2 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 ARG A:242 A:281 85.0 0.378 B -133.0 98.9 85.0 0.378 0.0 HOH
 3.916
 N
 O
ARG B:242 B:281 84.0 0.373 B -130.7 100.7 84.0 0.373 0.0 HOH
 4.457
 N
 O
ARG C:242 C:281 84.0 0.373 B -137.1 91.0 NA NA NA
ARG D:242 D:281 87.0 0.387 B -131.6 98.7 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 ARG A:242 A:242 136.0 0.604 -133.2 360.0 136.0 0.604 0.0 HOH
 2.713
 N
 O
ARG B:242 B:242 88.0 0.391 B -134.6 109.4 88.0 0.391 0.0 HOH
 2.802
 O
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 ARG A:242 A:242 112.0 0.498 B -146.1 95.9 112.0 0.498 0.0 HOH
 2.905
 N
 O
ARG B:242 D:242 113.0 0.502 B -138.2 91.2 NA NA NA
ARG C:242 C:242 78.0 0.347 B -134.5 111.0 NA NA NA
ARG D:242 B:242 91.0 0.404 B -135.8 107.4 91.0 0.404 0.0 HOH
 2.744
 O
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 ARG A:242 A:242 91.0 0.404 B -125.9 102.3 91.0 0.404 0.0 HOH
 2.840
 N
 O
ARG B:242 B:242 85.0 0.378 B -127.2 102.7 85.0 0.378 0.0 CL
HOH
 9.928
4.098
 NH2
CB
 CL
O
ARG C:242 C:242 85.0 0.378 B -127.2 115.9 NA NA NA
ARG D:242 D:242 87.0 0.387 B -124.5 100.0 NA NA NA
ARG E:242 E:242 72.0 0.32 B -124.4 100.5 NA NA NA
ARG F:242 F:242 74.0 0.329 B -124.7 98.9 NA NA NA
ARG G:242 G:242 74.0 0.329 B -123.8 98.2 NA NA NA
ARG H:242 H:242 70.0 0.311 B -126.0 104.7 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 ARG A:242 A:242 81.0 0.36 B -129.8 111.0 81.0 0.36 0.0 HOH
 2.854
 N
 O
ARG B:242 B:242 75.0 0.333 B -130.5 102.2 75.0 0.333 0.0 HOH
 5.722
 N
 O
ARG C:242 C:242 82.0 0.364 B -131.3 93.0 NA NA NA
ARG D:242 D:242 74.0 0.329 B -132.9 96.7 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 ARG A:242 A:242 93.0 0.413 B -133.2 118.2 93.0 0.413 0.0 HOH
 2.657
 O
 O
ARG B:242 B:242 85.0 0.378 B -133.7 98.4 85.0 0.378 0.0 HOH
 2.908
 N
 O
ARG C:242 C:242 80.0 0.356 B -130.6 105.4 NA NA NA
ARG D:242 D:242 88.0 0.391 B -127.5 104.2 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 ARG A:242 A:242 86.0 0.382 B -132.3 115.0 86.0 0.382 0.0 HOH
 2.539
 O
 O
ARG B:242 B:242 81.0 0.36 B -135.7 111.5 81.0 0.36 0.0 HOH
 2.858
 O
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 ARG A:242 A:242 93.0 0.413 B -124.8 107.3 93.0 0.413 0.0 HOH
 4.460
 N
 O
ARG B:242 B:242 95.0 0.422 B -121.0 107.9 95.0 0.422 0.0 HOH
 2.548
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 ARG A:281 A:281 88.0 0.391 B -130.6 99.3