Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 41853654 | . | A | C | CCDS3937.1:NM_000436.3:c.281gTt>gGt_NP_000427.1:p.94V>G | Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3dlx | 1 | P55809 | 100.0 | 0.0 |
X-RAY |
2008-08-12 | VAL | A:56 | A:94 | 19.0 | 0.123 | B | -122.0 | -180.0 | 19.0 | 0.123 | 0.0 |
HOH |
4.055 |
CG1 |
O |
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| VAL | B:56 | B:94 | 15.0 | 0.097 | B | -130.4 | 178.7 | 15.0 | 0.097 | 0.0 |
HOH |
4.919 |
N |
O |
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| VAL | C:56 | C:94 | 13.0 | 0.084 | B | -121.0 | 177.2 | NA | NA | NA | |||||||||||||
| VAL | D:56 | D:94 | 17.0 | 0.11 | B | -133.5 | 175.7 | NA | NA | NA | |||||||||||||
| 1m3e | 1 | Q29551 | 92.07 | 0.0 |
X-RAY |
2003-01-07 | VAL | A:55 | A:55 | 35.0 | 0.226 | B | -125.1 | 170.5 | 35.0 | 0.226 | 0.0 |
HOH |
3.800 |
CG1 |
O |
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| VAL | B:55 | B:55 | 17.0 | 0.11 | B | -126.5 | -180.0 | 17.0 | 0.11 | 0.0 |
HOH |
3.650 |
CB |
O |
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| VAL | C:55 | C:55 | 31.0 | 0.2 | B | -128.9 | 169.7 | NA | NA | NA | |||||||||||||
| VAL | D:55 | D:55 | 32.0 | 0.206 | B | -128.8 | 166.4 | NA | NA | NA | |||||||||||||
| 1o9l | 1 | Q29551 | 92.07 | 0.0 |
X-RAY |
2002-12-23 | VAL | A:55 | A:94 | 20.0 | 0.129 | B | -122.4 | 175.2 | 20.0 | 0.129 | 0.0 |
HOH |
4.153 |
N |
O |
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| VAL | B:55 | B:94 | 19.0 | 0.123 | B | -125.4 | 173.4 | 19.0 | 0.123 | 0.0 |
HOH |
3.646 |
CB |
O |
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| VAL | C:55 | C:94 | 20.0 | 0.129 | B | -121.5 | 176.4 | NA | NA | NA | |||||||||||||
| VAL | D:55 | D:94 | 17.0 | 0.11 | B | -129.5 | 170.4 | NA | NA | NA | |||||||||||||
| 1ooy | 1 | Q29551 | 92.07 | 0.0 |
X-RAY |
2004-04-27 | VAL | A:55 | A:55 | 25.0 | 0.161 | B | -133.2 | 178.2 | 25.0 | 0.161 | 0.0 |
HOH |
3.355 |
CB |
O |
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| VAL | B:55 | B:55 | 22.0 | 0.142 | B | -133.2 | 169.6 | 22.0 | 0.142 | 0.0 |
HOH |
3.550 |
CB |
O |
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| 3k6m | 1 | Q29551 | 92.07 | 0.0 |
X-RAY |
2010-07-07 | VAL | A:55 | A:55 | 26.0 | 0.168 | B | -126.2 | 177.0 | 26.0 | 0.168 | 0.0 |
HOH |
3.832 |
CG1 |
O |
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| VAL | B:55 | D:55 | 26.0 | 0.168 | B | -123.9 | 177.9 | NA | NA | NA | |||||||||||||
| VAL | C:55 | C:55 | 30.0 | 0.194 | -128.2 | 177.7 | NA | NA | NA | ||||||||||||||
| VAL | D:55 | B:55 | 20.0 | 0.129 | B | -131.1 | 177.0 | 20.0 | 0.129 | 0.0 |
HOH |
3.470 |
CG2 |
O |
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| 3oxo | 1 | Q29551 | 92.07 | 0.0 |
X-RAY |
2010-11-10 | VAL | A:55 | A:55 | 19.0 | 0.123 | B | -118.0 | 176.8 | 19.0 | 0.123 | 0.0 |
HOH |
3.690 |
CG1 |
O |
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| VAL | B:55 | B:55 | 25.0 | 0.161 | B | -118.4 | 175.6 | 25.0 | 0.161 | 0.0 |
HOH |
3.617 |
CG1 |
O |
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| VAL | C:55 | C:55 | 26.0 | 0.168 | B | -118.2 | 175.6 | NA | NA | NA | |||||||||||||
| VAL | D:55 | D:55 | 18.0 | 0.116 | B | -118.1 | 175.4 | NA | NA | NA | |||||||||||||
| VAL | E:55 | E:55 | 27.0 | 0.174 | B | -118.2 | 174.4 | NA | NA | NA | |||||||||||||
| VAL | F:55 | F:55 | 18.0 | 0.116 | B | -117.0 | 175.7 | NA | NA | NA | |||||||||||||
| VAL | G:55 | G:55 | 20.0 | 0.129 | B | -118.4 | 174.5 | NA | NA | NA | |||||||||||||
| VAL | H:55 | H:55 | 26.0 | 0.168 | B | -117.6 | 175.0 | NA | NA | NA | |||||||||||||
| 2nrc | 1 | Q29551 | 91.86 | 0.0 |
X-RAY |
2007-09-18 | VAL | A:55 | A:55 | 20.0 | 0.129 | B | -120.6 | 177.5 | 20.0 | 0.129 | 0.0 |
HOH |
5.222 |
CG1 |
O |
||
| VAL | B:55 | B:55 | 18.0 | 0.116 | B | -116.8 | -179.3 | 18.0 | 0.116 | 0.0 |
HOH |
5.774 |
N |
O |
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| VAL | C:55 | C:55 | 14.0 | 0.09 | B | -140.9 | 166.8 | NA | NA | NA | |||||||||||||
| VAL | D:55 | D:55 | 19.0 | 0.123 | B | -122.6 | -179.8 | NA | NA | NA | |||||||||||||
| 2nrb | 1 | Q29551 | 91.86 | 0.0 |
X-RAY |
2007-09-18 | VAL | A:55 | A:55 | 21.0 | 0.135 | B | -130.4 | -175.0 | 21.0 | 0.135 | 0.0 |
HOH |
3.383 |
CB |
O |
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| VAL | B:55 | B:55 | 20.0 | 0.129 | B | -133.3 | -175.1 | 20.0 | 0.129 | 0.0 |
HOH |
3.799 |
CG1 |
O |
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| VAL | C:55 | C:55 | 19.0 | 0.123 | B | -130.2 | 177.7 | NA | NA | NA | |||||||||||||
| VAL | D:55 | D:55 | 17.0 | 0.11 | B | -131.8 | 176.9 | NA | NA | NA | |||||||||||||
| 1ooz | 1 | Q29551 | 91.86 | 0.0 |
X-RAY |
2004-04-27 | VAL | A:55 | A:55 | 15.0 | 0.097 | B | -132.6 | 178.4 | 15.0 | 0.097 | 0.0 |
HOH |
3.458 |
CG1 |
O |
||
| VAL | B:55 | B:55 | 20.0 | 0.129 | B | -126.9 | 175.2 | 20.0 | 0.129 | 0.0 |
HOH |
3.473 |
CB |
O |
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| 1ope | 1 | Q29551 | 91.86 | 0.0 |
X-RAY |
2004-04-27 | VAL | A:55 | A:55 | 27.0 | 0.174 | B | -130.0 | 176.2 | 27.0 | 0.174 | 0.0 |
HOH |
4.603 |
N |
O |
||
| VAL | B:55 | B:55 | 26.0 | 0.168 | B | -131.4 | 175.9 | 26.0 | 0.168 | 0.0 |
HOH |
4.020 |
CG1 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p55809-f1 | 1 | P55809 | 100.0 | 0.0 | VAL | A:94 | A:94 | 13.0 | 0.084 | B | -124.0 | 168.5 | |