Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41862746 . C A CCDS3937.1:NM_000436.3:c.185gGt>gTt_NP_000427.1:p.62G>V Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 GLY A:24 A:62 0.0 0.0 -68.7 166.4 0.0 0.0 0.0 HOH
 2.924
 O
 O
GLY B:24 B:62 0.0 0.0 -63.9 160.7 0.0 0.0 0.0 HOH
 2.895
 O
 O
GLY C:24 C:62 0.0 0.0 -68.9 164.0 NA NA NA
GLY D:24 D:62 2.0 0.027 -70.0 163.4 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 GLY A:23 A:23 1.0 0.013 -65.1 177.9 1.0 0.013 0.0 HOH
 2.540
 O
 O
GLY B:23 B:23 2.0 0.027 -65.0 177.4 2.0 0.027 0.0 HOH
 2.692
 O
 O
GLY C:23 C:23 1.0 0.013 -64.7 177.8 NA NA NA
GLY D:23 D:23 1.0 0.013 -66.2 177.7 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 GLY A:23 A:62 1.0 0.013 -70.3 170.9 1.0 0.013 0.0 HOH
 3.448
 C
 O
GLY B:23 B:62 1.0 0.013 -75.0 169.1 1.0 0.013 0.0 HOH
 3.574
 C
 O
GLY C:23 C:62 1.0 0.013 -66.5 170.4 NA NA NA
GLY D:23 D:62 1.0 0.013 -70.7 169.3 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 GLY A:23 A:23 1.0 0.013 -69.8 168.8 1.0 0.013 0.0 HOH
 2.792
 O
 O
GLY B:23 B:23 1.0 0.013 -71.4 165.1 1.0 0.013 0.0 HOH
 2.841
 O
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 GLY A:23 A:23 1.0 0.013 -60.8 161.6 1.0 0.013 0.0 HOH
 2.781
 O
 O
GLY B:23 D:23 0.0 0.0 -66.4 166.0 NA NA NA
GLY C:23 C:23 1.0 0.013 -67.6 171.9 NA NA NA
GLY D:23 B:23 3.0 0.04 -69.1 166.2 3.0 0.04 0.0 HOH
 2.731
 O
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 GLY A:23 A:23 0.0 0.0 -64.7 154.1 0.0 0.0 0.0 HOH
 3.193
 C
 O
GLY B:23 B:23 0.0 0.0 -66.0 155.7 0.0 0.0 0.0 HOH
 3.475
 C
 O
GLY C:23 C:23 1.0 0.013 -64.9 156.1 NA NA NA
GLY D:23 D:23 1.0 0.013 -64.6 153.5 NA NA NA
GLY E:23 E:23 0.0 0.0 -65.2 153.2 NA NA NA
GLY F:23 F:23 1.0 0.013 -64.9 155.3 NA NA NA
GLY G:23 G:23 0.0 0.0 -65.6 156.0 NA NA NA
GLY H:23 H:23 1.0 0.013 -66.9 154.7 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 GLY A:23 A:23 0.0 0.0 -64.1 170.7 0.0 0.0 0.0 HOH
 2.899
 O
 O
GLY B:23 B:23 0.0 0.0 -62.4 162.6 0.0 0.0 0.0 HOH
 3.366
 C
 O
GLY C:23 C:23 0.0 0.0 -63.1 166.5 NA NA NA
GLY D:23 D:23 2.0 0.027 -75.4 164.0 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 GLY A:23 A:23 0.0 0.0 -63.9 170.6 0.0 0.0 0.0 HOH
 2.568
 O
 O
GLY B:23 B:23 1.0 0.013 -59.4 168.0 1.0 0.013 0.0 HOH
 2.650
 O
 O
GLY C:23 C:23 1.0 0.013 -75.4 172.3 NA NA NA
GLY D:23 D:23 0.0 0.0 -65.3 173.8 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 GLY A:23 A:23 1.0 0.013 -68.7 173.2 1.0 0.013 0.0 HOH
 2.616
 O
 O
GLY B:23 B:23 1.0 0.013 -69.0 171.7 1.0 0.013 0.0 HOH
 2.692
 O
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 GLY A:23 A:23 1.0 0.013 -68.6 169.6 1.0 0.013 0.0 HOH
 2.615
 O
 O
GLY B:23 B:23 1.0 0.013 -76.0 172.2 1.0 0.013 0.0 HOH
 3.191
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 GLY A:62 A:62 0.0 0.0 -68.4 166.2