Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 41862764 . C A CCDS3937.1:NM_000436.3:c.167gGt>gTt_NP_000427.1:p.56G>V Homo sapiens 3-oxoacid CoA-transferase 1 (OXCT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3dlx 1 P55809 100.0 0.0 X-RAY
 2008-08-12 GLY A:18 A:56 45.0 0.6 T 84.7 -6.9 45.0 0.6 0.0 HOH
 2.737
 O
 O
GLY B:18 B:56 42.0 0.56 T 87.8 -1.7 42.0 0.56 0.0
GLY C:18 C:56 46.0 0.613 T 83.1 7.7 NA NA NA
GLY D:18 D:56 48.0 0.64 T 80.7 2.7 NA NA NA
1m3e 1 Q29551 92.07 0.0 X-RAY
 2003-01-07 GLY A:17 A:17 40.0 0.533 T 73.1 9.0 40.0 0.533 0.0 HOH
 5.450
 O
 O
GLY B:17 B:17 39.0 0.52 T 73.2 7.4 39.0 0.52 0.0 HOH
 2.949
 O
 O
GLY C:17 C:17 39.0 0.52 T 73.6 5.7 NA NA NA
GLY D:17 D:17 43.0 0.573 T 73.1 8.9 NA NA NA
1o9l 1 Q29551 92.07 0.0 X-RAY
 2002-12-23 GLY A:17 A:56 39.0 0.52 T 83.0 -6.3 39.0 0.52 0.0 HOH
 4.092
 N
 O
GLY B:17 B:56 38.0 0.507 T 82.8 -5.4 38.0 0.507 0.0 HOH
 4.138
 O
 O
GLY C:17 C:56 40.0 0.533 T 79.6 -6.0 NA NA NA
GLY D:17 D:56 39.0 0.52 T 85.5 -5.4 NA NA NA
1ooy 1 Q29551 92.07 0.0 X-RAY
 2004-04-27 GLY A:17 A:17 37.0 0.493 T 79.2 4.2 37.0 0.493 0.0 HOH
 2.704
 O
 O
GLY B:17 B:17 41.0 0.547 T 79.0 0.9 41.0 0.547 0.0 HOH
 2.660
 O
 O
3k6m 1 Q29551 92.07 0.0 X-RAY
 2010-07-07 GLY A:17 A:17 42.0 0.56 T 84.8 -4.4 42.0 0.56 0.0 HOH
 2.662
 O
 O
GLY B:17 D:17 42.0 0.56 T 90.6 -1.6 NA NA NA
GLY C:17 C:17 42.0 0.56 T 87.7 -1.3 NA NA NA
GLY D:17 B:17 39.0 0.52 T 87.3 -0.2 39.0 0.52 0.0 HOH
 2.698
 O
 O
3oxo 1 Q29551 92.07 0.0 X-RAY
 2010-11-10 GLY A:17 A:17 42.0 0.56 T 80.6 2.2 42.0 0.56 0.0 HOH
 3.627
 C
 O
GLY B:17 B:17 41.0 0.547 T 80.1 1.9 41.0 0.547 0.0 HOH
 9.747
 N
 O
GLY C:17 C:17 42.0 0.56 T 80.6 2.1 NA NA NA
GLY D:17 D:17 41.0 0.547 T 80.5 2.1 NA NA NA
GLY E:17 E:17 42.0 0.56 T 80.6 1.3 NA NA NA
GLY F:17 F:17 42.0 0.56 T 79.3 4.2 NA NA NA
GLY G:17 G:17 42.0 0.56 T 80.0 2.6 NA NA NA
GLY H:17 H:17 41.0 0.547 T 80.8 1.1 NA NA NA
2nrc 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 GLY A:17 A:17 38.0 0.507 T 94.6 -6.2 38.0 0.507 0.0 HOH
 7.729
 N
 O
GLY B:17 B:17 41.0 0.547 T 79.9 7.1 41.0 0.547 0.0 HOH
 4.890
 O
 O
GLY C:17 C:17 40.0 0.533 T 75.3 3.7 NA NA NA
GLY D:17 D:17 39.0 0.52 T 69.5 15.8 NA NA NA
2nrb 1 Q29551 91.86 0.0 X-RAY
 2007-09-18 GLY A:17 A:17 44.0 0.587 T 77.5 8.9 44.0 0.587 0.0 HOH
 6.017
 N
 O
GLY B:17 B:17 41.0 0.547 T 75.1 -5.0 41.0 0.547 0.0 HOH
 2.475
 O
 O
GLY C:17 C:17 41.0 0.547 T 85.4 -5.0 NA NA NA
GLY D:17 D:17 34.0 0.453 T 86.3 -15.4 NA NA NA
1ooz 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 GLY A:17 A:17 39.0 0.52 T 78.4 -3.2 39.0 0.52 0.0 HOH
 2.568
 O
 O
GLY B:17 B:17 39.0 0.52 T 82.3 -7.6 39.0 0.52 0.0 HOH
 2.783
 O
 O
1ope 1 Q29551 91.86 0.0 X-RAY
 2004-04-27 GLY A:17 A:17 41.0 0.547 T 79.6 -0.9 41.0 0.547 0.0 HOH
 2.743
 O
 O
GLY B:17 B:17 38.0 0.507 T 77.0 4.2 38.0 0.507 0.0 HOH
 2.962
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p55809-f1 1 P55809 100.0 0.0 GLY A:56 A:56 46.0 0.613 T 84.8 -2.3