Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 57913614 . T A CCDS3976.1:NM_138453.2:c.169Tct>Act_NP_612462.1:p.57S>T Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 SER A:57 A:57 119.0 1.0 -64.5 -17.5 119.0 1.0 0.0 GDP
HOH
 4.832
4.849
 CA
N
 O2'
O
SER B:57 NA:NA DO NA DO DO DO NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 PRO A:35 A:49 118.0 0.814 S -46.2 -15.6 118.0 0.814 0.0 GTP
HOH
 3.072
8.402
 O
CG
 O3'
O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 SER A:50 A:48 112.0 0.974 -76.1 -15.5 112.0 0.974 0.0 GNP
1PE
HOH
 2.786
9.550
2.852
 O
O
OG
 O3'
C16
O
SER B:50 B:48 110.0 0.957 S -73.1 -18.2 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 PRO A:32 A:49 117.0 0.807 S -68.7 -17.5 117.0 0.807 0.0 GNP
HOH
 2.728
4.296
 O
CA
 O3'
O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 PRO A:50 A:49 81.0 0.559 -74.6 159.3 19.0 0.131 0.428 A:P20337:0.428
 UNX
UNX
UNX
HOH
 4.444
7.209
8.219
2.802
 N
CD
CG
O
 UNK
UNK
UNK
O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 PRO A:49 A:49 117.0 0.807 -86.0 42.3 117.0 0.807 0.0 UNX
GDP
HOH
 6.113
5.294
2.739
 CD
CA
O
 UNK
O2'
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 SER A:57 A:57 115.0 1.0 -79.9 -9.3
af-p20336-f1 1 P20336 84.09 9e-142 PRO A:49 A:49 118.0 0.814 -74.8 -14.5
af-p20337-f1 1 P20337 80.82 5e-137 PRO A:49 A:49 119.0 0.821 -73.7 -14.5