Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58021846 . A C CCDS3976.1:NM_138453.2:c.270gaA>gaC_NP_612462.1:p.90E>D Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 GLU A:90 NA:NA DO NA DO DO DO NA NA NA
GLU B:90 B:90 96.0 0.505 -53.9 121.6 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 GLU A:68 A:82 167.0 0.879 G -56.2 -11.0 167.0 0.879 0.0 GTP
HOH
 8.295
4.720
 N
CB
 O1G
O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 GLU A:83 A:81 162.0 0.853 G -57.1 -30.6 162.0 0.853 0.0 GNP
1PE
HOH
 7.793
8.015
2.696
 N
C
O
 O3G
OH3
O
GLU B:83 B:81 141.0 0.742 G -56.0 -34.7 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 GLU A:65 A:82 85.0 NA G -52.1 -35.8 85.0 NA NA GNP
HOH
 8.146
2.681
 N
O
 O3G
O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 GLU A:83 A:82 157.0 0.826 H -73.1 -19.0 157.0 0.826 0.0 UNX
UNX
HOH
 6.513
8.758
4.839
 OE1
O
OE1
 UNK
UNK
O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 GLU A:82 A:82 49.0 0.258 -119.9 145.4 49.0 0.258 0.0 HOH
 2.668
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 GLU A:90 A:90 105.0 0.553 G -57.2 -41.7
af-p20336-f1 1 P20336 84.09 9e-142 GLU A:82 A:82 105.0 0.553 G -53.8 -43.1
af-p20337-f1 1 P20337 80.82 5e-137 GLU A:82 A:82 107.0 0.563 G -55.2 -42.5