Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58021878 . G A CCDS3976.1:NM_138453.2:c.302cGt>cAt_NP_612462.1:p.101R>H Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 ARG A:101 A:101 214.0 0.951 T -45.8 -42.0 214.0 0.951 0.0 HOH
 8.980
 O
 O
ARG B:101 B:101 107.0 0.476 H -70.1 -30.7 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 ARG A:79 A:93 139.0 0.618 G -53.2 -14.8 88.0 0.391 0.227 B:P47709:0.227
 HOH
 3.334
 O
 O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 ARG A:94 A:92 203.0 0.902 T -59.6 122.8 203.0 0.902 0.0 HOH
 3.168
 N
 O
ARG B:94 B:92 205.0 0.911 T -52.6 130.8 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 ARG A:76 A:93 151.0 0.671 T -62.9 133.4 151.0 0.671 0.0 HOH
 3.084
 N
 O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 ARG A:94 A:93 120.0 0.533 T -51.3 121.2 120.0 0.533 0.0 HOH
 3.582
 CB
 O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 ARG A:93 A:93 204.0 0.907 T -61.3 125.5 204.0 0.907 0.0 HOH
 3.330
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 ARG A:101 A:101 184.0 0.818 T -59.1 125.6
af-p20336-f1 1 P20336 84.09 9e-142 ARG A:93 A:93 210.0 0.933 T -58.4 124.9
af-p20337-f1 1 P20337 80.82 5e-137 ARG A:93 A:93 208.0 0.924 T -59.2 125.3