Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58021888 . G A CCDS3976.1:NM_138453.2:c.312atG>atA_NP_612462.1:p.104M>I Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 MET A:104 A:104 47.0 0.254 S -71.0 -31.7 47.0 0.254 0.0 HOH
 2.820
 O
 O
MET B:104 B:104 37.0 0.2 -111.2 -0.2 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 MSE A:82 A:96 74.0 0.4 S -103.3 -21.2 13.0 0.07 0.33 B:P47709:0.33
 HOH
 3.757
 CE
 O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 MET A:97 A:95 52.0 0.281 S -90.9 -18.7 52.0 0.281 0.0 HOH
 4.860
 N
 O
MET B:97 B:95 32.0 0.173 S -91.5 -21.0 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 MET A:79 A:96 58.0 0.314 -100.2 -18.3 58.0 0.314 0.0 HOH
 2.756
 O
 O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 MET A:97 A:96 40.0 0.216 -92.6 -33.2 40.0 0.216 0.0 HOH
 7.894
 O
 O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 MET A:96 A:96 31.0 0.168 S -82.4 -26.9 31.0 0.168 0.0 UNX
HOH
 8.387
2.856
 CE
O
 UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 MET A:104 A:104 56.0 0.303 -93.1 -27.9
af-p20336-f1 1 P20336 84.09 9e-142 MET A:96 A:96 44.0 0.238 -93.7 -28.4
af-p20337-f1 1 P20337 80.82 5e-137 MET A:96 A:96 36.0 0.195 -92.4 -26.2