Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58021908 . A C CCDS3976.1:NM_138453.2:c.332gAc>gCc_NP_612462.1:p.111D>A Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 ASP A:111 A:111 9.0 0.06 E -104.2 125.6 9.0 0.06 0.0 GDP
HOH
 5.970
5.252
 OD2
N
 O4'
O
ASP B:111 B:111 9.0 0.06 E -106.0 124.8 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 ASP A:89 A:103 10.0 0.067 E -92.1 130.5 10.0 0.067 0.0 GTP
HOH
 5.850
2.990
 OD2
OD2
 O4'
O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 ASP A:104 A:102 3.0 0.02 E -115.9 122.7 3.0 0.02 0.0 GNP
HOH
 6.076
2.748
 OD2
OD2
 O4'
O
ASP B:104 B:102 4.0 0.027 E -117.8 122.5 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 ASP A:86 A:103 6.0 0.04 E -110.6 120.6 6.0 0.04 0.0 GNP
HOH
 6.224
2.840
 OD2
OD2
 O4'
O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 ASP A:104 A:103 9.0 0.06 E -115.1 119.4 9.0 0.06 0.0 GDP
HOH
 5.966
2.796
 OD2
OD2
 O4'
O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 ASP A:103 A:103 14.0 0.093 E -114.1 121.5 14.0 0.093 0.0 GDP
HOH
 6.149
2.727
 OD2
OD2
 O4'
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 ASP A:111 A:111 6.0 0.04 E -105.7 126.9
af-p20336-f1 1 P20336 84.09 9e-142 ASP A:103 A:103 5.0 0.033 E -104.6 126.4
af-p20337-f1 1 P20337 80.82 5e-137 ASP A:103 A:103 5.0 0.033 E -104.9 126.3