Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58120932 . A C CCDS3976.1:NM_138453.2:c.439Atg>Ctg_NP_612462.1:p.147M>L Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 MET A:147 A:147 67.0 0.362 -93.8 62.9 67.0 0.362 0.0 GDP
BTB
HOH
 3.223
3.024
9.205
 CG
CE
CB
 N2
O1
O
MET B:147 B:147 67.0 0.362 -90.3 70.6 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 MSE A:125 A:139 57.0 0.308 -85.2 58.5 57.0 0.308 0.0 GTP
HOH
 3.398
3.128
 CG
CE
 N2
O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 MET A:140 A:138 59.0 0.319 -86.7 58.0 59.0 0.319 0.0 HOH
 3.883
 C
 O
MET B:140 B:138 55.0 0.297 -90.4 63.1 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 MET A:122 A:139 63.0 0.341 -83.1 55.7 63.0 0.341 0.0 GNP
HOH
 3.315
3.141
 CE
CE
 N2
O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 MET A:140 A:139 63.0 0.341 -96.2 54.1 63.0 0.341 0.0 GDP
HOH
 3.236
3.803
 CG
SD
 N2
O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 LEU A:139 A:139 43.0 0.253 -90.5 46.7 43.0 0.253 0.0 GDP
HOH
 3.480
3.630
 CD2
C
 N2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 MET A:147 A:147 50.0 0.27 -98.8 48.1
af-p20336-f1 1 P20336 84.09 9e-142 MET A:139 A:139 51.0 0.276 -98.2 47.6
af-p20337-f1 1 P20337 80.82 5e-137 MET A:139 A:139 50.0 0.27 -96.6 47.7