Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58147014 . G A CCDS3976.1:NM_138453.2:c.520Gcc>Acc_NP_612462.1:p.174A>T Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 ALA A:174 A:174 3.0 0.026 T -61.8 -29.8 3.0 0.026 0.0 GDP
HOH
 2.787
4.470
 N
O
 O6
O
ALA B:174 B:174 2.0 0.017 T -61.0 -28.9 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 ALA A:152 A:166 2.0 0.017 T -64.5 -59.8 2.0 0.017 0.0 GTP
HOH
 2.688
6.548
 N
O
 O6
O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 ALA A:167 A:165 2.0 0.017 T -61.5 -34.9 2.0 0.017 0.0 GNP
HOH
 2.888
4.183
 N
O
 O6
O
ALA B:167 B:165 2.0 0.017 T -61.7 -34.4 NA NA NA
3rab 1 P63012 89.94 2e-115 X-RAY
 1999-04-16 ALA A:149 A:166 2.0 0.017 T -66.5 -34.4 2.0 0.017 0.0 GNP
HOH
 2.880
4.370
 N
O
 O6
O
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 ALA A:167 A:166 8.0 0.07 T -62.5 -38.7 8.0 0.07 0.0 GDP
HOH
 2.969
7.721
 N
O
 O6
O
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 ALA A:166 A:166 3.0 0.026 T -60.6 -39.3 3.0 0.026 0.0 UNX
GDP
HOH
 8.724
2.978
4.318
 O
N
O
 UNK
O6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 ALA A:174 A:174 3.0 0.026 T -63.1 -31.8
af-p20336-f1 1 P20336 84.09 9e-142 ALA A:166 A:166 3.0 0.026 T -63.1 -32.5
af-p20337-f1 1 P20337 80.82 5e-137 ALA A:166 A:166 3.0 0.026 T -61.9 -31.3