Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 58147077 . A C CCDS3976.1:NM_138453.2:c.583Atg>Ctg_NP_612462.1:p.195M>L Homo sapiens RAB3C, member RAS oncogene family (RAB3C), mRNA.
pdb_id: 
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label_comp_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 100.0 4e-174 X-RAY
 2021-03-31 MET A:195 A:195 74.0 0.4 H -58.7 -42.1 74.0 0.4 0.0 HOH
 5.909
 N
 O
MET B:195 B:195 62.0 0.335 H -74.5 -15.1 NA NA NA
1zbd 1 P63012 84.26 3e-125 X-RAY
 1999-04-02 MSE A:173 A:187 64.0 0.346 H -65.3 -53.2 13.0 0.07 0.276 B:P47709:0.276
 HOH
 5.014
 SE
 O
4rkf 1 P25228 85.19 2e-119 X-RAY
 2014-12-10 MET A:188 A:186 144.0 0.778 -72.5 360.0 144.0 0.778 0.0 HOH
 3.883
 C
 O
MET B:188 B:186 96.0 0.519 H -58.9 -34.8 NA NA NA
3dz8 1 P20337 87.86 3e-114 X-RAY
 2008-08-12 MET A:188 A:187 156.0 0.843 -78.9 360.0 156.0 0.843 0.0
2gf9 1 O95716 84.12 2e-107 X-RAY
 2006-05-02 MET A:187 A:187 87.0 0.47 H -60.8 -31.1 87.0 0.47 0.0 HOH
 2.629
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96e17-f1 1 Q96E17 100.0 2e-174 MET A:195 A:195 52.0 0.281 H -66.9 -37.7
af-p20336-f1 1 P20336 84.09 9e-142 MET A:187 A:187 45.0 0.243 H -65.2 -39.6
af-p20337-f1 1 P20337 80.82 5e-137 MET A:187 A:187 47.0 0.254 H -70.3 -37.3