Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 72196892 . G A CCDS43329.1:NM_002270.3:c.2506Gta>Ata_NP_002261.3:p.836V>I Homo sapiens transportin 1 (TNPO1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2qmr 1 Q92973 100.0 0.0 X-RAY
 2007-10-30 VAL A:828 A:828 2.0 0.013 H -97.2 -34.7 2.0 0.013 0.0
VAL B:828 B:828 0.0 0.0 H -110.6 -31.7 NA NA NA
VAL C:828 C:828 0.0 0.0 H -111.0 -31.7 NA NA NA
VAL D:828 D:828 1.0 0.006 H -97.6 -35.5 NA NA NA
2z5j 1 Q92973 100.0 0.0 X-RAY
 2007-10-23 VAL A:828 A:828 0.0 0.0 S -108.6 -0.8 0.0 0.0 0.0
2z5k 1 Q92973 100.0 0.0 X-RAY
 2007-10-23 VAL A:828 A:828 0.0 0.0 T -106.6 -21.5 0.0 0.0 0.0 HOH
 7.057
 CG2
 O
2z5m 1 Q92973 100.0 0.0 X-RAY
 2007-10-23 VAL A:828 A:828 0.0 0.0 H -119.2 -22.2 0.0 0.0 0.0
2z5n 1 Q92973 100.0 0.0 X-RAY
 2007-10-23 VAL A:828 A:828 6.0 0.039 T -86.0 -34.3 6.0 0.039 0.0
2z5o 1 Q92973 100.0 0.0 X-RAY
 2007-10-23 VAL A:828 A:828 0.0 0.0 T -84.9 -33.5 0.0 0.0 0.0
4fq3 1 Q92973 100.0 0.0 X-RAY
 2013-08-21 VAL A:828 A:828 4.0 0.026 H -84.1 -9.3 4.0 0.026 0.0
1qbk 1 Q92973 99.89 0.0 X-RAY
 1999-06-01 VAL A:828 B:828 0.0 0.0 T -136.7 -26.5 0.0 0.0 0.0
5yvg 1 Q92973 96.63 0.0 X-RAY
 2018-05-16 VAL A:806 A:828 1.0 0.006 S -98.1 -3.7 1.0 0.006 0.0
VAL B:806 B:828 6.0 0.039 S -98.1 -5.7 NA NA NA
5yvh 1 Q92973 96.63 0.0 X-RAY
 2018-05-16 VAL A:806 NA:NA DO NA DO DO DO NA NA NA
5yvi 1 Q92973 96.63 0.0 X-RAY
 2018-05-16 VAL A:806 A:828 19.0 0.123 T -103.7 -20.9 19.0 0.123 0.0
7cyl 1 Q92973 96.63 0.0 X-RAY
 2021-02-24 VAL A:806 A:828 2.0 0.013 H -106.6 -27.5 2.0 0.013 0.0
2h4m 1 Q92973 96.4 0.0 X-RAY
 2006-10-24 VAL A:803 A:828 0.0 0.0 H -96.6 -34.0 0.0 0.0 0.0
VAL B:803 B:828 0.0 0.0 H -103.7 -28.7 0.0 0.0 0.0
5tqc 1 Q92973 96.29 0.0 X-RAY
 2017-02-15 VAL A:804 A:828 4.0 0.026 H -84.0 -18.1 4.0 0.026 0.0
2ot8 1 Q92973 95.17 0.0 X-RAY
 2007-04-10 VAL A:790 A:828 8.0 0.052 T -144.2 -28.1 8.0 0.052 0.0
VAL B:790 B:828 2.0 0.013 H -91.8 -38.5 NA NA NA
4fdd 1 Q92973 95.17 0.0 X-RAY
 2012-07-18 VAL A:790 A:828 1.0 0.006 T -109.4 -26.3 1.0 0.006 0.0 HOH
 5.862
 O
 O
4jlq 1 Q92973 94.94 0.0 X-RAY
 2013-04-03 VAL A:792 A:828 2.0 0.013 H -78.0 -13.6 2.0 0.013 0.0
4oo6 1 Q92973 94.94 0.0 X-RAY
 2014-02-12 VAL A:792 A:828 1.0 0.006 T -77.0 -32.0 1.0 0.006 0.0
5j3v 1 Q92973 94.94 0.0 X-RAY
 2016-09-21 VAL A:792 A:828 3.0 0.019 H -98.4 -15.5 3.0 0.019 0.0
VAL C:792 B:828 3.0 0.019 S -94.3 -18.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92973-f1 1 Q92973 100.0 0.0 VAL A:836 A:836 2.0 0.013 T -112.0 -14.4
af-o14787-f1 1 O14787 84.39 0.0 VAL A:835 A:835 2.0 0.013 T -103.5 -13.4