Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78411671 . G A CCDS4046.1:NM_001713.2:c.115Gta>Ata_NP_001704.2:p.39V>I Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 VAL A:39 A:39 10.0 0.065 S -132.6 140.4 0.0 0.0 0.065 B:Q93088:0.065
 HCS
HOH
 6.961
2.596
 HG11
HG22
 OXT
O
VAL B:39 B:39 9.0 0.058 S -129.3 142.2 0.0 0.0 0.058 A:Q93088:0.058
 HCS
HOH
 6.949
2.697
 HG11
O
 OXT
O
VAL C:39 C:39 9.0 0.058 S -131.0 139.4 0.0 0.0 0.058 D:Q93088:0.058
 HCS
HOH
 6.964
2.631
 HG21
HG22
 O
O
VAL D:39 D:39 9.0 0.058 S -125.2 142.0 0.0 0.0 0.058 C:Q93088:0.058
 HCS
HOH
 7.026
2.548
 HG21
HG22
 O
O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 VAL A:39 NA:NA DO NA DO DO DO NA NA NA
VAL B:39 NA:NA DO NA DO DO DO NA NA NA
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 VAL A:39 A:39 12.0 0.077 S -128.2 148.4 0.0 0.0 0.077 B:Q93088:0.077
 CBH
HOH
 8.032
2.688
 CG1
O
 O13
O
VAL B:39 B:39 13.0 0.084 S -125.9 153.5 0.0 0.0 0.084 A:Q93088:0.084
 CBH
HOH
 8.235
2.600
 CG2
O
 O13
O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 VAL A:39 A:39 6.0 0.039 S -132.2 125.3 0.0 0.0 0.039 B:O09171:0.039
 BME
HOH
 7.612
2.701
 CG1
O
 O1
O
VAL B:39 B:39 7.0 0.045 S -133.3 132.8 0.0 0.0 0.045 A:O09171:0.045
 BME
HOH
 8.238
2.767
 CG1
O
 S2
O
VAL C:39 C:39 8.0 0.052 S -134.8 131.0 0.0 0.0 0.052 D:O09171:0.052
 HOH
 3.384
 O
 O
VAL D:39 D:39 4.0 0.026 S -132.6 118.4 0.0 0.0 0.026 C:O09171:0.026
 HOH
 3.102
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 VAL A:39 A:39 14.0 0.09 S -139.2 150.9