Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78415085 . G A CCDS4046.1:NM_001713.2:c.170cGc>cAc_NP_001704.2:p.57R>H Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 ARG A:57 A:57 61.0 0.271 H -53.7 -47.2 61.0 0.271 0.0 SRT
HOH
 3.090
1.936
 HH22
HH21
 O41
O
ARG B:57 B:57 65.0 0.289 H -53.5 -47.2 65.0 0.289 0.0 SRT
HOH
 2.090
2.071
 HH11
HH12
 O1
O
ARG C:57 C:57 61.0 0.271 H -55.7 -46.1 61.0 0.271 0.0 SRT
HOH
 3.501
2.213
 HH22
HH11
 O4
O
ARG D:57 D:57 64.0 0.284 H -55.3 -47.5 64.0 0.284 0.0 SRT
HOH
 2.285
2.242
 HH11
HH21
 O11
O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 ARG A:57 A:57 57.0 0.253 H -63.6 -43.8 57.0 0.253 0.0 HOH
 2.510
 NE
 O
ARG B:57 B:57 61.0 0.271 H -63.5 -41.2 61.0 0.271 0.0 HOH
 3.570
 NE
 O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 ARG A:57 A:57 55.0 0.244 H -58.0 -43.3 55.0 0.244 0.0 HOH
 4.071
 NH2
 O
ARG B:57 B:57 54.0 0.24 H -65.1 -46.2 54.0 0.24 0.0 HOH
 2.741
 NH1
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 ARG A:57 A:57 60.0 0.267 H -61.2 -49.2 60.0 0.267 0.0 HOH
 3.398
 NH2
 O
ARG B:57 B:57 58.0 0.258 H -62.3 -48.4 58.0 0.258 0.0 HOH
 3.415
 CG
 O
ARG C:57 C:57 60.0 0.267 H -60.3 -50.5 60.0 0.267 0.0 HOH
 3.735
 NH2
 O
ARG D:57 D:57 59.0 0.262 H -61.4 -49.4 59.0 0.262 0.0 HOH
 2.985
 NH1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 ARG A:57 A:57 31.0 0.138 H -61.5 -45.0