Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78417149 . G A CCDS4046.1:NM_001713.2:c.586Gtg>Atg_NP_001704.2:p.196V>M Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 VAL A:196 A:196 19.0 0.123 -71.9 127.0 19.0 0.123 0.0 HOH
 5.747
 HG12
 O
VAL B:196 B:196 25.0 0.161 -78.1 124.4 25.0 0.161 0.0 HOH
 6.740
 C
 O
VAL C:196 C:196 26.0 0.168 -65.7 131.1 26.0 0.168 0.0 HOH
 5.745
 HG12
 O
VAL D:196 D:196 20.0 0.129 -63.2 120.0 20.0 0.129 0.0 HOH
 6.606
 C
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 VAL A:196 A:196 15.0 0.097 -74.2 117.4 15.0 0.097 0.0 HOH
 3.664
 CG2
 O
VAL B:196 B:196 14.0 0.09 -75.4 115.6 14.0 0.09 0.0 HOH
 4.905
 CA
 O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 VAL A:196 A:196 14.0 0.09 -80.6 117.8 14.0 0.09 0.0 HOH
 2.874
 CG1
 O
VAL B:196 B:196 19.0 0.123 -73.8 116.4 19.0 0.123 0.0 HOH
 2.947
 N
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 VAL A:196 A:196 19.0 0.123 -63.1 114.7 19.0 0.123 0.0 HOH
 6.960
 C
 O
VAL B:196 B:196 20.0 0.129 -62.8 124.3 20.0 0.129 0.0 HOH
 3.749
 CG2
 O
VAL C:196 C:196 32.0 0.206 -78.7 134.4 32.0 0.206 0.0 HOH
 7.763
 O
 O
VAL D:196 D:196 14.0 0.09 -81.8 83.8 14.0 0.09 0.0 HOH
 3.580
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 VAL A:196 A:196 19.0 0.123 -71.0 122.3