Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78417158 . G A CCDS4046.1:NM_001713.2:c.595Ggc>Agc_NP_001704.2:p.199G>S Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 GLY A:199 A:199 15.0 0.2 H -54.2 -48.0 15.0 0.2 0.0 HOH
 2.893
 HA3
 O
GLY B:199 B:199 13.0 0.173 H -52.2 -58.1 13.0 0.173 0.0 HOH
 1.963
 H
 O
GLY C:199 C:199 13.0 0.173 H -55.2 -49.8 13.0 0.173 0.0 HOH
 2.100
 H
 O
GLY D:199 D:199 13.0 0.173 H -56.3 -45.6 13.0 0.173 0.0 HOH
 1.894
 H
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLY A:199 A:199 18.0 0.24 H -54.1 -54.6 18.0 0.24 0.0 HOH
 2.670
 N
 O
GLY B:199 B:199 14.0 0.187 H -57.8 -51.4 14.0 0.187 0.0 HOH
 2.715
 N
 O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLY A:199 A:199 14.0 0.187 H -57.7 -49.9 14.0 0.187 0.0 HOH
 2.553
 O
 O
GLY B:199 B:199 11.0 0.147 H -59.4 -53.5 11.0 0.147 0.0 HOH
 2.876
 N
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 GLY A:199 A:199 9.0 0.12 H -51.6 -55.5 9.0 0.12 0.0 HOH
 2.499
 N
 O
GLY B:199 B:199 10.0 0.133 H -52.8 -54.4 10.0 0.133 0.0 HOH
 2.592
 N
 O
GLY C:199 C:199 9.0 0.12 H -52.8 -53.6 9.0 0.12 0.0 HOH
 2.248
 N
 O
GLY D:199 D:199 9.0 0.12 H -52.4 -54.4 9.0 0.12 0.0 HOH
 6.713
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 GLY A:199 A:199 13.0 0.173 H -59.1 -42.6