Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78421959 . G A CCDS4046.1:NM_001713.2:c.716cGa>cAa_NP_001704.2:p.239R>Q Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 GLN A:239 A:239 180.0 1.0 T 55.8 31.6 180.0 1.0 0.0 HOH
 4.877
 O
 O
GLN B:239 B:239 166.0 0.922 T 49.6 34.2 166.0 0.922 0.0
GLN C:239 C:239 174.0 0.967 T 55.1 28.0 174.0 0.967 0.0 HOH
 6.567
 H
 O
GLN D:239 D:239 187.0 1.0 T 49.6 44.2 187.0 1.0 0.0 HOH
 7.649
 C
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLN A:239 A:239 169.0 0.939 T 60.3 26.2 169.0 0.939 0.0 HOH
 3.410
 OE1
 O
GLN B:239 B:239 177.0 0.983 T 50.8 43.9 177.0 0.983 0.0
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 GLN A:239 A:239 179.0 0.994 T 60.3 12.8 179.0 0.994 0.0 HOH
 2.862
 NE2
 O
GLN B:239 B:239 163.0 0.906 T 52.5 24.1 163.0 0.906 0.0 HOH
 5.952
 N
 O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 ARG A:239 A:239 230.0 1.0 T 64.6 -15.6 230.0 1.0 0.0 HOH
 2.604
 NH2
 O
ARG B:239 B:239 230.0 1.0 T 64.9 -15.9 230.0 1.0 0.0 HOH
 2.978
 CA
 O
ARG C:239 C:239 230.0 1.0 T 65.4 -16.3 230.0 1.0 0.0 HOH
 2.913
 O
 O
ARG D:239 D:239 231.0 1.0 T 65.5 -16.7 231.0 1.0 0.0 HOH
 2.995
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 ARG A:239 A:239 230.0 1.0 T 55.3 32.5