Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78422000 . A C CCDS4046.1:NM_001713.2:c.757Act>Cct_NP_001704.2:p.253T>P Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 THR A:253 A:253 0.0 0.0 -136.7 53.3 0.0 0.0 0.0 HOH
 3.409
 H
 O
THR B:253 B:253 0.0 0.0 -134.8 52.9 0.0 0.0 0.0 HOH
 3.548
 H
 O
THR C:253 C:253 1.0 0.007 -138.4 51.7 1.0 0.007 0.0 HOH
 3.364
 H
 O
THR D:253 D:253 0.0 0.0 -134.8 57.8 0.0 0.0 0.0 HOH
 3.522
 H
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 THR A:253 A:253 0.0 0.0 -140.9 48.7 0.0 0.0 0.0 SM
CIT
HOH
 9.695
7.427
3.982
 N
N
C
 SM
O3
O
THR B:253 B:253 0.0 0.0 -137.7 55.5 0.0 0.0 0.0 SM
CIT
HOH
 9.886
4.095
5.726
 N
N
N
 SM
O4
O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 THR A:253 A:253 1.0 0.007 -136.6 52.0 1.0 0.007 0.0 CIT
HOH
 4.176
5.699
 N
N
 O4
O
THR B:253 B:253 0.0 0.0 -135.2 55.9 0.0 0.0 0.0 CIT
HOH
 4.129
5.774
 N
N
 O4
O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 THR A:253 A:253 2.0 0.014 -127.7 60.2 2.0 0.014 0.0 HOH
 3.247
 OG1
 O
THR B:253 B:253 1.0 0.007 -126.9 58.0 1.0 0.007 0.0 HOH
 4.138
 O
 O
THR C:253 C:253 2.0 0.014 -127.0 59.9 2.0 0.014 0.0 HOH
 4.222
 O
 O
THR D:253 D:253 2.0 0.014 -127.3 58.9 2.0 0.014 0.0 HOH
 4.083
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 THR A:253 A:253 0.0 0.0 -132.9 46.8