Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 78423604 . T A CCDS4046.1:NM_001713.2:c.835Tgg>Agg_NP_001704.2:p.279W>R Homo sapiens betaine--homocysteine S-methyltransferase (BHMT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4m3p 1 Q93088 99.75 0.0 X-RAY
 2014-06-18 TRP A:279 A:279 30.0 0.118 H -69.6 -43.3 13.0 0.051 0.067 B:Q93088:0.067
 HOH
 2.610
 HH2
 O
TRP B:279 B:279 29.0 0.114 H -66.1 -43.0 12.0 0.047 0.067 A:Q93088:0.067
 HOH
 2.638
 HH2
 O
TRP C:279 C:279 28.0 0.11 H -69.0 -40.2 13.0 0.051 0.059 D:Q93088:0.059
 HOH
 2.592
 HH2
 O
TRP D:279 D:279 29.0 0.114 H -70.7 -40.4 12.0 0.047 0.067 C:Q93088:0.067
 HOH
 2.670
 HH2
 O
1lt7 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 TRP A:279 A:279 60.0 0.235 H -71.8 -38.9 38.0 0.149 0.086 B:Q93088:0.086
 CIT
HOH
 9.067
3.578
 O
O
 O5
O
TRP B:279 B:279 62.0 0.243 H -70.1 -43.2 43.0 0.169 0.074 A:Q93088:0.075
 CIT
HOH
 9.760
3.158
 O
O
 O7
O
1lt8 1 Q93088 98.28 0.0 X-RAY
 2002-09-11 TRP A:279 A:279 28.0 0.11 H -71.0 -38.0 11.0 0.043 0.067 B:Q93088:0.067
 HOH
 2.941
 CE3
 O
TRP B:279 B:279 28.0 0.11 H -70.4 -38.6 13.0 0.051 0.059 A:Q93088:0.059
 CIT
HOH
 9.993
3.429
 C
CH2
 O7
O
1umy 1 O09171 93.09 0.0 X-RAY
 2004-05-06 TRP A:279 A:279 28.0 0.11 H -64.8 -36.1 12.0 0.047 0.063 B:O09171:0.063
 HOH
 3.980
 CH2
 O
TRP B:279 B:279 28.0 0.11 H -64.1 -34.7 12.0 0.047 0.063 A:O09171:0.063
 HOH
 3.709
 CZ3
 O
TRP C:279 C:279 30.0 0.118 H -63.7 -34.6 13.0 0.051 0.067 D:O09171:0.067
 HOH
 4.016
 CD1
 O
TRP D:279 D:279 28.0 0.11 H -64.5 -35.2 11.0 0.043 0.067 C:O09171:0.067
 HOH
 3.326
 CZ3
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q93088-f1 1 Q93088 100.0 0.0 TRP A:279 A:279 36.0 0.141 H -74.3 -38.1